PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G18037.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 71aa MW: 8757.9 Da PI: 5.6253 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 36.1 | 2e-11 | 13 | 62 | 3 | 51 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkv 51 +Gf FhP+ +el+ +y+ +kv++++++++e +++diy ePw+L +++ AT5G18037.1 13 VGFWFHPSAQELIIRYIGPKVTKRSNKEFELEDKFDIYAKEPWRLShTET 62 7************************9999988999**********82222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-10 | 9 | 71 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 14.249 | 11 | 71 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 71 aa Download sequence Send to blast |
MSMVKYYDKE EHVGFWFHPS AQELIIRYIG PKVTKRSNKE FELEDKFDIY AKEPWRLSHT 60 ETNFLEPNEW F |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT5G18037 | |||||
AtGenExpress | AT5G18037 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G18037.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G18037 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB015473 | 1e-117 | AB015473.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCM23. | |||
GenBank | CP002688 | 1e-117 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001119244.1 | 4e-47 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | ||||
TrEMBL | B3H7D8 | 1e-45 | B3H7D8_ARATH; NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | ||||
STRING | AT5G18037.1 | 2e-46 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14744 | 8 | 21 |
Link Out ? help Back to Top | |
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Phytozome | AT5G18037.1 |
Entrez Gene | 6241326 |
iHOP | AT5G18037 |
wikigenes | AT5G18037 |