PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G17810.1 | ||||||||
Common Name | MVA3.160, MVA3.17, WOX12 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | WOX | ||||||||
Protein Properties | Length: 268aa MW: 29713.9 Da PI: 6.5705 | ||||||||
Description | WUSCHEL related homeobox 12 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 49.3 | 8.2e-16 | 19 | 79 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r R+++++eq+ +Le+ F++ + +p ++e ++ k l + +++V++WFqNrR + ++ AT5G17810.1 19 RARWSPKPEQILILESIFNSgTVNPPKDETVRIRKMLekfgAVGDANVFYWFQNRRSRSRR 79 78*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 105.3 | 4e-34 | 18 | 81 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+P+peQi iLe++++sG+++P+k+e+ ri+++Le++G+++d+NVfyWFQNr++R+r+++ AT5G17810.1 18 VRARWSPKPEQILILESIFNSGTVNPPKDETVRIRKMLEKFGAVGDANVFYWFQNRRSRSRRRH 81 589**********************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.58E-14 | 10 | 85 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-8 | 14 | 84 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.515 | 15 | 80 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.5E-6 | 17 | 84 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.9E-13 | 19 | 79 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MNQEGASHSP SSTSTEPVRA RWSPKPEQIL ILESIFNSGT VNPPKDETVR IRKMLEKFGA 60 VGDANVFYWF QNRRSRSRRR HRQLLAATTA AATSIGAEDH QHMTAMSMHQ YPCSNNEIDL 120 GFGSCSNLSA NYFLNGSSSS QIPSFFLGLS SSSGGCENNN GMENLFKMYG HESDHNHQQQ 180 HHSSNAASVL NPSDQNSNSQ YEQEGFMTVF INGVPMEVTK GAIDMKTMFG DDSVLLHSSG 240 LPLPTDEFGF LMHSLQHGQT YFLVPRQT |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT5G17810 | |||||
AtGenExpress | AT5G17810 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G17810.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
IntAct | Search Q8GY25 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G17810 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY251403 | 0.0 | AY251403.1 Arabidopsis thaliana WOX12 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001190327.1 | 0.0 | WUSCHEL related homeobox 12 | ||||
Refseq | NP_197283.2 | 0.0 | WUSCHEL related homeobox 12 | ||||
Swissprot | Q8GY25 | 0.0 | WOX12_ARATH; WUSCHEL-related homeobox 12 | ||||
TrEMBL | A0A178U995 | 0.0 | A0A178U995_ARATH; WOX12 | ||||
STRING | AT5G17810.2 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2819 | 27 | 68 | Representative plant | OGRP4697 | 12 | 22 |
Link Out ? help Back to Top | |
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Phytozome | AT5G17810.1 |
Entrez Gene | 831649 |
iHOP | AT5G17810 |
wikigenes | AT5G17810 |