PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G06510.1
Common NameF15M7.4, NFYA10, NF-YA10
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NF-YA
Protein Properties Length: 269aa    MW: 29794.4 Da    PI: 8.8466
Description nuclear factor Y, subunit A10
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G06510.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA89.45e-28134186258
    CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                   ++YVN+KQy++I++RRq+Rak+e+   l +++rkpy+h+SRh hA+rRpRgsgGrF
  AT5G06510.1 134 GTIYVNSKQYHGIIRRRQSRAKAEK---L-SRCRKPYMHHSRHLHAMRRPRGSGGRF 186
                  689*********************9...6.888***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.6E-30131189IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115232.025132189IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.0E-24135186IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860137157IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009015anatomyportion of vascular tissue
PO:0009047anatomystem
PO:0025022anatomycollective leaf structure
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0004507developmental stageplant embryo bilateral stage
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MQTEELLSPP QTPWWNAFGS QPLTTESLSG EASDSFTGVK AVTTEAEQGV VDKQTSTTLF  60
TFSPGGEKSS RDVPKPHVAF AMQSACFEFG FAQPMMYTKH PHVEQYYGVV SAYGSQRSSG  120
RVMIPLKMET EEDGTIYVNS KQYHGIIRRR QSRAKAEKLS RCRKPYMHHS RHLHAMRRPR  180
GSGGRFLNTK TADAAKQSKP SNSQSSEVFH PENETINSSR EANESNLSDS AVTSMDYFLS  240
SSAYSPGGMV MPIKWNAAAM DIGCCKLNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-15136200572NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
4g91_A2e-15136193563HAPB protein
4g92_A2e-15136193563HAPB protein
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible250688_at0.0
Expression AtlasAT5G06510-
AtGenExpressAT5G06510-
ATTED-IIAT5G06510-
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Function -- GeneRIF ? help Back to Top
  1. Findings showed leaf development was regulated by NF-YA2 and NF-YA10 through the auxin-signaling pathway and may provide a new insight into the genetic engineering of vegetables biomass and crop productivity.
    [PMID: 28469131]
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G06510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
BioGRIDAT1G54830
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G06510
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0846430.0AY084643.1 Arabidopsis thaliana clone 114015 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001330575.10.0nuclear factor Y, subunit A10
RefseqNP_001330576.10.0nuclear factor Y, subunit A10
RefseqNP_196269.10.0nuclear factor Y, subunit A10
RefseqNP_974741.10.0nuclear factor Y, subunit A10
SwissprotQ8LFU00.0NFYAA_ARATH; Nuclear transcription factor Y subunit A-10
TrEMBLA0A178URE30.0A0A178URE3_ARATH; NF-YA10
STRINGAT5G06510.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30082767
Representative plantOGRP51361122
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Gusmaroli G,Tonelli C,Mantovani R
    Regulation of novel members of the Arabidopsis thaliana CCAAT-binding nuclear factor Y subunits.
    Gene, 2002. 283(1-2): p. 41-8
    [PMID:11867211]
  3. M
    Genome-wide analysis of the Arabidopsis leaf transcriptome reveals interaction of phosphate and sugar metabolism.
    Plant Physiol., 2007. 143(1): p. 156-71
    [PMID:17085508]
  4. Hackenberg D, et al.
    Studies on differential nuclear translocation mechanism and assembly of the three subunits of the Arabidopsis thaliana transcription factor NF-Y.
    Mol Plant, 2012. 5(4): p. 876-88
    [PMID:22199235]
  5. Leyva-Gonz
    Functional and transcriptome analysis reveals an acclimatization strategy for abiotic stress tolerance mediated by Arabidopsis NF-YA family members.
    PLoS ONE, 2012. 7(10): p. e48138
    [PMID:23118940]
  6. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  7. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  8. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]