PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G06110.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 663aa    MW: 75633.1 Da    PI: 8.9372
Description DnaJ domain ;Myb-like DNA-binding domain
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G06110.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94.1e-07475516240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++W++eE + l ++ +++++g   +W+ I++++g+gR+ +++
      AT5G06110.1 475 KPWSKEEIDMLRKGTTKFPKGtsqRWEVISEYIGTGRSVEEI 516
                      69***********************************99876 PP
2Myb_DNA-binding27.38.3e-09607652447
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                      W++  +  lv+a k ++++   +W+++a  ++ g+t +qck ++ ++
      AT5G06110.1 607 WSAVQERALVQALKTFPKEtnqRWERVATAVP-GKTMNQCKKKFADL 652
                      ********************************.*********99766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465653.4E-1978178IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1105.5E-1998199IPR001623DnaJ domain
SMARTSM002718.5E-1599174IPR001623DnaJ domain
PfamPF002261.1E-16100179IPR001623DnaJ domain
CDDcd062571.07E-12100171IPR001623DnaJ domain
PROSITE profilePS5007617.284100182IPR001623DnaJ domain
PRINTSPR006255.4E-7105123IPR001623DnaJ domain
PRINTSPR006255.4E-7123138IPR001623DnaJ domain
PRINTSPR006255.4E-7154174IPR001623DnaJ domain
PROSITE patternPS006360159178IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.602.1E-4469516IPR009057Homeodomain-like
PROSITE profilePS500906.005469524IPR017877Myb-like domain
SMARTSM007176.3E-5473526IPR001005SANT/Myb domain
SuperFamilySSF466897.1E-7475518IPR009057Homeodomain-like
CDDcd001670.00151476516No hitNo description
SMARTSM007176.2E-8603655IPR001005SANT/Myb domain
SuperFamilySSF466896.88E-9605658IPR009057Homeodomain-like
CDDcd001671.27E-5607653No hitNo description
Gene3DG3DSA:1.10.10.603.4E-5607651IPR009057Homeodomain-like
PfamPF002492.8E-7607652IPR001005SANT/Myb domain
PROSITE profilePS500907.12607653IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006457Biological Processprotein folding
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MQSWGINSAI KLLTYSSELK DGQALYASSN CHPVKALNRE PAGHAFHSAA LKLRGCAKEA  60
TSKNEDTDKK VPKEKDGEYI PSYDSHNIKG KKKSGKLQHD HYALLGLGNL RYLATDDQIR  120
KSYRDAALKH HPDKLATLLL LEETEEAKQA KKDEIESHFK LIQEAYEVLM DSTKRRIFDS  180
TDEFDDKVPT DCAPQDFFKV FGPAFKRNAR WSNSPLPDLG DENTPLKEVD RFYSTWYTFK  240
SWREFPEEEE HDIEQAESRE EKRWMERENA RKTQKARKEE YARIRTLVDN AYKKDIRIQK  300
RKDDEKAKKL QKKEAKVMAK RQQEEAAAAA IEEEKRRKEE EAKRAAEAAQ LHKRAKEREK  360
KLLRKERSRL RVLSAPVLSQ RLLGISDEHV EDLCMSLNTE QLRKLCDKME NKEGMALAKV  420
IKNGSNIDDD KIEIEEEEVQ VAVKQNGHIE ANGHVEANGH VEAKVDTATH EKKEKPWSKE  480
EIDMLRKGTT KFPKGTSQRW EVISEYIGTG RSVEEILKAT KTVLLQKPDS AKAFDSFLEN  540
RKPAASINSP LSTREELGEP IIPTKAHEDN NSTKTETAEQ NGKTKENNNS NGNSEPAAAS  600
GSDPDGWSAV QERALVQALK TFPKETNQRW ERVATAVPGK TMNQCKKKFA DLKDVIRTKK  660
PTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A1e-1419629920124Zuotin
5dje_B1e-1419629920124Zuotin
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.328980.0flower| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO3341874460.0
Genevisible250711_at0.0
Expression AtlasAT5G06110-
AtGenExpressAT5G06110-
ATTED-IIAT5G06110-
Function -- GeneRIF ? help Back to Top
  1. Results suggest that GlsA1 and GlsA2 are an essential component of the machinery that maintains the integrity of meristematic tissue.[GlsA2]
    [PMID: 26826012]
  2. AtZRF1a/b play both PRC1-related and PRC1-unrelated functions in regulating plant growth and development.[AtZRF1b]
    [PMID: 27630184]
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G06110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G06110
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0020300.0AP002030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16F4.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001190234.10.0DnaJ and myb-like DNA-binding domain-containing protein
RefseqNP_196229.10.0DnaJ and myb-like DNA-binding domain-containing protein
TrEMBLA0A178UFW70.0A0A178UFW7_ARATH; Uncharacterized protein
TrEMBLQ9LHS50.0Q9LHS5_ARATH; Cell division related protein-like
STRINGAT5G06110.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Representative plantOGRP38231521
Publications ? help Back to Top
  1. Zhang S, et al.
    Resources for targeted insertional and deletional mutagenesis in Arabidopsis.
    Plant Mol. Biol., 2003. 53(1-2): p. 133-50
    [PMID:14756312]
  2. Ascencio-Ib
    Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.
    Plant Physiol., 2008. 148(1): p. 436-54
    [PMID:18650403]
  3. Van Leene J, et al.
    Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana.
    Mol. Syst. Biol., 2010. 6: p. 397
    [PMID:20706207]
  4. Elrouby N,Coupland G
    Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes.
    Proc. Natl. Acad. Sci. U.S.A., 2010. 107(40): p. 17415-20
    [PMID:20855607]
  5. Klopffleisch K, et al.
    Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis.
    Mol. Syst. Biol., 2011. 7: p. 532
    [PMID:21952135]
  6. Guzmán-López JA,Abraham-Juárez MJ,Lozano-Sotomayor P,de Folter S,Simpson J
    Arabidopsis thaliana gonidialess A/Zuotin related factors (GlsA/ZRF) are essential for maintenance of meristem integrity.
    Plant Mol. Biol., 2016. 91(1-2): p. 37-51
    [PMID:26826012]
  7. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]