PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G28815.1
Common NameBHLH127, F16A16.80
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 307aa    MW: 34588.8 Da    PI: 8.7017
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G28815.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.53.2e-15153200355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  ++hn +ErrRR++iN+++ +L++l+P +      K +K+++Le ++eY+ksL+
  AT4G28815.1 153 EMHNLAERRRREKINERMKTLQQLIPRC-----NKSTKVSMLEDVIEYVKSLE 200
                  58*************************8.....699***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.473150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-12153200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.34E-15153203No hitNo description
SuperFamilySSF474599.68E-18153223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-18154205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-14156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MMIISSQILL LFGFKLFFET RGEDDIVELL CKIGQTQIPS SDPLPILRGS GSGGREENTP  60
LPPPLPHQNL FIQEDEMSSW PHHPLRQDYL CSELYASTPA PHPQSSVSLA PPPPKPPSSA  120
PYGQIIAPRS APRIQGTEEA RGSTSRKRSR AAEMHNLAER RRREKINERM KTLQQLIPRC  180
NKSTKVSMLE DVIEYVKSLE MQINQFMPHM AMGMNQPPAY IPFPSQAHMA GVGPSYPPPR  240
YPFPNIQTFD PSRVWLQSPQ PNPVSNQPQM NPYGQFVGHH QMQQSLPPPL QVILSQYPLC  300
LFLCSNK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145162RKRSRAAEMHNLAERRRR
2158163ERRRRE
3159164RRRREK
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible253760_at1e-177
Expression AtlasAT4G28815-
AtGenExpressAT4G28815-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G28815.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G28815
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5775860.0AJ577586.1 Arabidopsis thaliana mRNA for putative bHLH127 transcription factor (bHLH127 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001078463.10.0basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ7XHI70.0BH127_ARATH; Transcription factor bHLH127
TrEMBLA0A1P8B4H31e-166A0A1P8B4H3_ARATH; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein
STRINGAT4G28815.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM90411635
Representative plantOGRP25816128
Publications ? help Back to Top
  1. Heim MA, et al.
    The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.
    Mol. Biol. Evol., 2003. 20(5): p. 735-47
    [PMID:12679534]
  2. Toledo-Ortiz G,Huq E,Quail PH
    The Arabidopsis basic/helix-loop-helix transcription factor family.
    Plant Cell, 2003. 15(8): p. 1749-70
    [PMID:12897250]
  3. Bailey PC, et al.
    Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana.
    Plant Cell, 2003. 15(11): p. 2497-502
    [PMID:14600211]
  4. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]