PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT4G06598.1

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bZIP

Protein Properties

Length: 341aa MW: 38267.3 Da PI: 9.9795

Description

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT4G06598.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	21.1	6.7e-07	242	278	17	55
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 A+rsR RK ++i+eLe+ v+ Le Nk+Lk++le+l +e AT4G06598.1 242 AQRSRVRKIQYIAELERNVQILE--NKSLKNRLESLAQE 278 89******************5..777****99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd14703	7.00E-14	232	279	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.6E-5	242	278	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008150	Biological Process	biological_process
GO:0003674	Molecular Function	molecular_function

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000293	anatomy	guard cell

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MASSKGSQNH RNLGCNGKQA LLPPKSPFTG GPTFSADFVP SSVIGSKAVQ KLGEGNANHH 60 RTSSESFLIE EQPSWLDDLL NEPETPVRKG GHRRSSSDSF AYVDVPVGFD VDYTLWDGGR 120 YNNNNGFSNH VRGPKESDYL RSQPVPFYPS AHLSKQKIRP WDSLPDSGAR PNSSSGCLES 180 SSITRSGSSG SLRDTEKAYS AADSKKDFIN NFAKSSFEKR DNPLAKSATS EADTKRARQQ 240 FAQRSRVRKI QYIAELERNV QILENKSLKN RLESLAQEQL IKYLEHDVLE KEIVRLRALY 300 QLQQQQEPQQ QHQTKKQGSS SHQRSKSRDL ETQFTNLSLR P

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
At.44411	0.0	flower\| root

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	AT4G06598
AtGenExpress	AT4G06598

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT4G06598.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT4G06598

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT002467	0.0	BT002467.1 Arabidopsis thaliana Unknown protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002872349.2	0.0	uncharacterized protein At4g06598
Swissprot	Q8W3M7	0.0	Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBL	A0A178URP8	0.0	A0A178URP8_ARATH; Uncharacterized protein
STRING	AT4G06598.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3360	24	44
Representative plant	OGRP4252	12	19

Link Out ? help Back to Top
Phytozome	AT4G06598.1
Entrez Gene	3770020
iHOP	AT4G06598
wikigenes	AT4G06598

Publications ? help Back to Top
Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4. DNA Res., 2001. 8(6): p. 285-90 [PMID:11853315] Rehrauer H, et al. AGRONOMICS1: a new resource for Arabidopsis transcriptome profiling. Plant Physiol., 2010. 152(2): p. 487-99 [PMID:20032078]