PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G00130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GeBP | ||||||||
Protein Properties | Length: 194aa MW: 22548.4 Da PI: 10.1932 | ||||||||
Description | DNA-binding storekeeper protein-related transcriptional regulator | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 47.5 | 5.2e-15 | 30 | 91 | 41 | 98 |
DUF573 41 vkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifelskkiWgs 98 +kk i+f+++k+q+v+K++rLKkKf++ vk+ ++++e++ +ke+++k f+ls +iWgs AT4G00130.1 30 FKKLIEFDATKNQIVTKLQRLKKKFNNAVKNarkkGQTEDEVEYAKESEKKRFDLSIMIWGS 91 7999**********************999887666788999*******************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.9E-10 | 30 | 90 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008150 | Biological Process | biological_process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MMRLRRLLER MLRRCCFRDC SVRLTKSLCF KKLIEFDATK NQIVTKLQRL KKKFNNAVKN 60 ARKKGQTEDE VEYAKESEKK RFDLSIMIWG SNGVLVAGKS SKKKVAPKEM KPEETDAKVV 120 NEGLSIGREM VPFGSSCGLD ESKLTTGWEN VEDGAEKREV EEKWKKFKDK LFELLYERSV 180 LMNKTEAMMF KAES |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145339833 | 0.0 | ||||
Genevisible | 255697_at | 0.0 | ||||
Expression Atlas | AT4G00130 | - | ||||
AtGenExpress | AT4G00130 | - | ||||
ATTED-II | AT4G00130 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G00130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G00130 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ446786 | 0.0 | DQ446786.1 Arabidopsis thaliana clone pENTR221-At4g00130 hypothetical protein (At4g00130) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_191924.2 | 1e-138 | DNA-binding storekeeper protein-related transcriptional regulator | ||||
Swissprot | Q1PED2 | 1e-139 | STKLK_ARATH; Probable transcription factor At4g00130 | ||||
TrEMBL | A0A178V4N3 | 1e-110 | A0A178V4N3_ARATH; Uncharacterized protein | ||||
STRING | AT4G00130.1 | 1e-137 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9272 | 17 | 35 |
Link Out ? help Back to Top | |
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Phytozome | AT4G00130.1 |
Entrez Gene | 825649 |
iHOP | AT4G00130 |
wikigenes | AT4G00130 |
Publications ? help Back to Top | |||
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