PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G56560.1 | ||||||||
Common Name | anac065, NAC065, T5P19_210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 228aa MW: 25921.4 Da PI: 9.627 | ||||||||
Description | NAC domain containing protein 65 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 40.1 | 1.1e-12 | 115 | 165 | 1 | 49 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.k 49 lppGf+F P+d+e++++yLk+ +g+++ l +v i++v+iy+++P++L + AT3G56560.1 115 LPPGFKFMPNDKEVINCYLKPYSDGNTNVLLNVpIHRVNIYESNPQTLSgR 165 79*************************9999999**************833 PP | |||||||
2 | NAM | 28.4 | 4.6e-09 | 187 | 219 | 96 | 128 |
NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +vg k+ L++y g+ ++g+ktdW+m+ey+l AT3G56560.1 187 GDGVVGNKRPLAYYVGKPSEGVKTDWLMQEYSL 219 6778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.32E-26 | 104 | 225 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 15.815 | 115 | 228 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-10 | 116 | 219 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MFDFKIFTFS FAQSKYLENI REKTLTEVST SDIELLRRNS QPFRRATPCS LTVDLQANSF 60 TPKLQSYLMM MPGRNKRKER SWPEPQTQPQ SEIPSSSSSL AADNMSPPST IAYVLPPGFK 120 FMPNDKEVIN CYLKPYSDGN TNVLLNVPIH RVNIYESNPQ TLSGRNVATL TEDIGTQKWL 180 PKRFKAGDGV VGNKRPLAYY VGKPSEGVKT DWLMQEYSLD HSSHNTTR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18410526 | 0.0 | ||||
Genevisible | 251694_s_at | 1e-176 | ||||
Expression Atlas | AT3G56560 | - | ||||
AtGenExpress | AT3G56560 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G56560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G56560 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL163972 | 1e-171 | AL163972.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T5P19. | |||
GenBank | CP002686 | 1e-171 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_191215.1 | 1e-171 | NAC domain containing protein 65 | ||||
TrEMBL | Q9LXY4 | 1e-170 | Q9LXY4_ARATH; NAC domain containing protein 65 | ||||
STRING | AT3G56560.1 | 1e-170 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2793 | 15 | 63 |
Link Out ? help Back to Top | |
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Phytozome | AT3G56560.1 |
Entrez Gene | 824823 |
iHOP | AT3G56560 |
wikigenes | AT3G56560 |
Publications ? help Back to Top | |||
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