PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G27940.1 | ||||||||
Common Name | ASL28, K24A2.3, LBD26 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | LBD | ||||||||
Protein Properties | Length: 153aa MW: 17600.5 Da PI: 9.7245 | ||||||||
Description | LOB domain-containing protein 26 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 84.6 | 1.4e-26 | 5 | 103 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C++C++++++C+++C++a fp+++ +kf +v+++FG ++++ +lk+l++ er d++++l+yeA+ + +P ++ +++ +l + q+++e++++k AT3G27940.1 5 PCEVCRFQNKQCVNNCMFALLFPSSDLEKFDVVNRIFGLETLTFYLKDLSPMERIDTTRTLYYEAKPCFLNPPKNPSKFLEALLNYPYQKAEEVSKTK 102 7*********************************************************************************************9988 PP DUF260 99 e 99 + AT3G27940.1 103 K 103 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.563 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.3E-21 | 5 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008150 | Biological Process | biological_process |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0009025 | anatomy | vascular leaf |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MNANPCEVCR FQNKQCVNNC MFALLFPSSD LEKFDVVNRI FGLETLTFYL KDLSPMERID 60 TTRTLYYEAK PCFLNPPKNP SKFLEALLNY PYQKAEEVSK TKKLLASYSR PCVVLALPAP 120 KYTQSKSKPS VLRKRKRKTK SSDESAIRVV EDS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 137 | RKRKRK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 42565256 | 0.0 | ||||
Expression Atlas | AT3G27940 | - | ||||
AtGenExpress | AT3G27940 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G27940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G27940 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473861 | 0.0 | AB473861.1 Arabidopsis thaliana ASL28 mRNA for ASYMMETRIC LEAVES2-like 28 protein, complete cds. | |||
GenBank | AP001302 | 0.0 | AP001302.1 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K24A2. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001326100.1 | 1e-108 | LOB domain-containing protein 26 | ||||
Refseq | NP_001326101.1 | 1e-108 | LOB domain-containing protein 26 | ||||
Refseq | NP_189433.1 | 1e-108 | LOB domain-containing protein 26 | ||||
Swissprot | Q9LIJ0 | 1e-109 | LBD26_ARATH; LOB domain-containing protein 26 | ||||
TrEMBL | A0A178VCA6 | 1e-98 | A0A178VCA6_ARATH; LBD26 | ||||
STRING | AT3G27940.1 | 1e-107 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM21012 | 4 | 5 |
Link Out ? help Back to Top | |
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Phytozome | AT3G27940.1 |
Entrez Gene | 822418 |
iHOP | AT3G27940 |
wikigenes | AT3G27940 |