PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G25890.1
Common NameCRF11, ERF119, MPE11.5
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 332aa    MW: 36732.2 Da    PI: 4.7968
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G25890.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.12.6e-14129176152
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                  s+  GVr++k +g+W+AeIr+p     +  r +lg++ t e+Aa a+   +++
  AT3G25890.1 129 SKPVGVRQRK-WGKWAAEIRHPI----TkVRTWLGTYETLEQAADAYATKKLE 176
                  7899*****9.**********72....36******************877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.16E-18129170No hitNo description
PfamPF008471.1E-8129171IPR001471AP2/ERF domain
SMARTSM003806.7E-12130184IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-14130177IPR016177DNA-binding domain
PROSITE profilePS5103218.176130187IPR001471AP2/ERF domain
PRINTSPR003675.0E-6131142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-18133179IPR001471AP2/ERF domain
PRINTSPR003675.0E-6153169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0032259Biological Processmethylation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008168Molecular Functionmethyltransferase activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAERKKRSSI QTNKPNKKPM KKKPFQLNHL PGLSEDLKTM RKLRFVVNDP YATDYSSSEE  60
EERSQRRKRY VCEIDLPFAQ AATQAESESS YCQESNNNGV SKTKISACSK KVLRSKASPV  120
VGRSSTTVSK PVGVRQRKWG KWAAEIRHPI TKVRTWLGTY ETLEQAADAY ATKKLEFDAL  180
AAATSAASSV LSNESGSMIS ASGSSIDLDK KLVDSTLDQQ AGESKKASFD FDFADLQIPE  240
MGCFIDDSFI PNACELDFLL TEENNNQMLD DYCGIDDLDI IGLECDGPSE LPDYDFSDVE  300
IDLGLIGTTI DKYAFVDHIA TTTPTPLNIA CP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.373070.0flower| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible258074_at0.0
Expression AtlasAT3G25890-
AtGenExpressAT3G25890-
ATTED-IIAT3G25890-
Functional Description ? help Back to Top
Source Description
TAIRencodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G25890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G25890
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0230410.0AB023041.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MPE11.
GenBankAK2295500.0AK229550.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL18-01-N04.
GenBankAY5608770.0AY560877.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At3g25890) mRNA, complete cds.
GenBankBT0295180.0BT029518.1 Arabidopsis thaliana At3g25890 mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001078209.10.0Integrase-type DNA-binding superfamily protein
RefseqNP_189218.10.0Integrase-type DNA-binding superfamily protein
SwissprotQ9LUA20.0EF119_ARATH; Ethylene-responsive transcription factor ERF119
TrEMBLA0A178VGC20.0A0A178VGC2_ARATH; CRF11
STRINGAT3G25890.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Representative plantOGRP6161718
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  3. Truman W,de Zabala MT,Grant M
    Type III effectors orchestrate a complex interplay between transcriptional networks to modify basal defence responses during pathogenesis and resistance.
    Plant J., 2006. 46(1): p. 14-33
    [PMID:16553893]
  4. Ascencio-Ib
    Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.
    Plant Physiol., 2008. 148(1): p. 436-54
    [PMID:18650403]