PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G10590.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 206aa    MW: 23932.8 Da    PI: 8.3682
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G10590.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.21.1e-09111157248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 
                      ++WT+eE+ l++++ k++G g  +t  +t   k++t+ q+ s+ q y+
      AT3G10590.1 111 NPWTEEEHRLFLQGLKKYGEG-ASTLTSTNFvKTKTPRQVSSHAQYYK 157
                      69*******************.88866665589**********99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.143254IPR017884SANT domain
SMARTSM007170.0013353IPR001005SANT/Myb domain
SuperFamilySSF466896.28E-5557IPR009057Homeodomain-like
PROSITE profilePS512949.731102161IPR017930Myb domain
SuperFamilySSF466893.14E-12107158IPR009057Homeodomain-like
SMARTSM007171.4E-5109159IPR001005SANT/Myb domain
PfamPF002492.8E-6111157IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-6112156IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-10112158IPR006447Myb domain, plants
CDDcd001677.51E-6112157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009046anatomyflower
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MASSPRWTED DNRRFKSALS QFPPDNKRLV NVAQHLPKPL EEVKYYYEKL VNDVYLPKPL  60
ENVTQHLQKP MEMEEMKYMY EKMANDVNQM PEYVPLAESS QSKRRKKDTP NPWTEEEHRL  120
FLQGLKKYGE GASTLTSTNF VKTKTPRQVS SHAQYYKRQK SDNKKEKRRS IFDITLESTE  180
GNPDSGNQNP PDDDDPSQGQ GTCLGV
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible258960_at0.0
Expression AtlasAT3G10590-
AtGenExpressAT3G10590-
ATTED-IIAT3G10590-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G10590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G10590
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5503000.0AY550300.1 Arabidopsis thaliana MYB transcription factor (At3g10590) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_187670.11e-153Duplicated homeodomain-like superfamily protein
TrEMBLA0MEV21e-152A0MEV2_ARATH; Uncharacterized protein (Fragment)
TrEMBLQ9SQY91e-152Q9SQY9_ARATH; Duplicated homeodomain-like superfamily protein
STRINGAT3G10590.11e-153(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Yanhui C, et al.
    The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family.
    Plant Mol. Biol., 2006. 60(1): p. 107-24
    [PMID:16463103]
  3. Mandaokar A, et al.
    Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling.
    Plant J., 2006. 46(6): p. 984-1008
    [PMID:16805732]