PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G06590.1 | ||||||||
Common Name | AIF2, BHLH148, EN143, F5E6.8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 221aa MW: 24256 Da PI: 12.3375 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.4 | 7.1e-05 | 164 | 198 | 16 | 55 |
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +N + L +l+P + +K s iLe+A++YI+ L+ AT3G06590.1 164 VNRKVRVLGRLVPGC-----GKQSVPVILEEATDYIQALE 198 566667778888888.....9****************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.19E-9 | 145 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.077 | 148 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.0E-7 | 163 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MASLISDIEP PTSTTSDLVR RKKRSSASSA ASSRSSASSV SGEIHARWRS EKQQRIYSAK 60 LFQALQQVRL NSSASTSSSP TAQKRGKAVR EAADRALAVS ARGRTLWSRA ILANRIKLKF 120 RKQRRPRATM AIPAMTTVVS SSSNRSRKRR VSVLRLNKKS IPDVNRKVRV LGRLVPGCGK 180 QSVPVILEEA TDYIQALEMQ VRAMNSLVQL LSSYGSAPPP I |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.25233 | 0.0 | flower| root| silique |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 258511_at | 0.0 | ||||
Expression Atlas | AT3G06590 | - | ||||
AtGenExpress | AT3G06590 | - | ||||
ATTED-II | AT3G06590 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | bHLH transcription factor that binds DNA on specific sequence 5'-CANNTG-3' in target gene promoters (PubMed:24009530). Negatively regulates brassinosteroid signaling (PubMed:20023194). Together with BHLH148/RITF1, regulates the transcription of several genes involved in the detoxification of reactive oxygen species (ROS) generated by salt (NaCl) stress. Confers tolerance to salt and to the oxidative stress-inducing reagents hydrogen peroxide H(2)O(2) and methyl viologen (MV) (PubMed:24009530). {ECO:0000269|PubMed:20023194, ECO:0000269|PubMed:24009530}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G06590.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salt (NaCl) stress. {ECO:0000269|PubMed:24009530}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT4G34530, AT4G36540, AT5G15160, AT1G59640 | |||||
IntAct | Search Q9C8Z9 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G06590 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC020580 | 0.0 | AC020580.11 Arabidopsis thaliana chromosome 3 BAC F5E6 genomic sequence, complete sequence. | |||
GenBank | AY081288 | 0.0 | AY081288.1 Arabidopsis thaliana unknown protein (At3g06590) mRNA, complete cds. | |||
GenBank | AY093390 | 0.0 | AY093390.1 Arabidopsis thaliana unknown protein (At3g06590) mRNA, complete cds. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001325894.1 | 1e-154 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Refseq | NP_001325895.1 | 1e-154 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Refseq | NP_566287.1 | 1e-154 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Refseq | NP_974239.1 | 1e-154 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Swissprot | Q9C8Z9 | 1e-156 | BH148_ARATH; Transcription factor bHLH148 | ||||
TrEMBL | A0A178VAS2 | 1e-152 | A0A178VAS2_ARATH; AIF2 | ||||
STRING | AT3G06590.2 | 1e-154 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6157 | 13 | 18 |
Link Out ? help Back to Top | |
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Phytozome | AT3G06590.1 |
Entrez Gene | 819838 |
iHOP | AT3G06590 |
wikigenes | AT3G06590 |