PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G04420.2 | ||||||||
Common Name | anac048, NAC048, T27C4.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 340aa MW: 38794.5 Da PI: 5.0866 | ||||||||
Description | NAC domain containing protein 48 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 135.9 | 2.6e-42 | 4 | 130 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 p+G+rF+Ptd+e+vv+yL++k ++++ ++++vi++v i +++Pw+Lp k+k ++++w fFs++++ky +g+++ r+tksgyWk tgk k++l+ +++ AT3G04420.2 4 PVGLRFRPTDKEIVVDYLRPKNSDRDtSHVDRVISTVTIRSFDPWELPCKIKLKDESWCFFSPKENKYGRGDQQIRKTKSGYWKITGKPKPILR-NRQ 100 89*******************999984566678***************99999****************************************9.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 ++g kk+L+fy ++ g+k+dWvmhey++ AT3G04420.2 101 EIGEKKVLMFYMSKELGGSKSDWVMHEYHA 130 9***************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.37E-49 | 2 | 148 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 43.723 | 3 | 148 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.4E-22 | 4 | 129 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0009047 | anatomy | stem |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MENPVGLRFR PTDKEIVVDY LRPKNSDRDT SHVDRVISTV TIRSFDPWEL PCKIKLKDES 60 WCFFSPKENK YGRGDQQIRK TKSGYWKITG KPKPILRNRQ EIGEKKVLMF YMSKELGGSK 120 SDWVMHEYHA FSPTQMMMTY TICKVMFKGD VREISSSSAS YGSEIEQSRD SLIPLLVNDS 180 EEEAQIEDAI PIEEWETWLT DDGVDEQVNH IMNMKDDRNN HRPQKPLTGV LIDDSSDDDD 240 DSDLLSPTTN SIENSSTCDS FGSSDQINLV SLTQEVSQAL ITSIDTPEKI KSPYDDAQGT 300 GAGGQKLGQE TREKKRAGFF HRMIQIFVKK IHQCSSISRT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-29 | 4 | 135 | 18 | 147 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-29 | 4 | 135 | 18 | 147 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-29 | 4 | 135 | 18 | 147 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-29 | 4 | 135 | 18 | 147 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-29 | 4 | 135 | 21 | 150 | NAC domain-containing protein 19 |
3swm_B | 2e-29 | 4 | 135 | 21 | 150 | NAC domain-containing protein 19 |
3swm_C | 2e-29 | 4 | 135 | 21 | 150 | NAC domain-containing protein 19 |
3swm_D | 2e-29 | 4 | 135 | 21 | 150 | NAC domain-containing protein 19 |
3swp_A | 2e-29 | 4 | 135 | 21 | 150 | NAC domain-containing protein 19 |
3swp_B | 2e-29 | 4 | 135 | 21 | 150 | NAC domain-containing protein 19 |
3swp_C | 2e-29 | 4 | 135 | 21 | 150 | NAC domain-containing protein 19 |
3swp_D | 2e-29 | 4 | 135 | 21 | 150 | NAC domain-containing protein 19 |
4dul_A | 1e-29 | 4 | 135 | 18 | 147 | NAC domain-containing protein 19 |
4dul_B | 1e-29 | 4 | 135 | 18 | 147 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.27362 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 258571_at | 0.0 | ||||
Expression Atlas | AT3G04420 | - | ||||
AtGenExpress | AT3G04420 | - | ||||
ATTED-II | AT3G04420 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G04420.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G04420 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY060587 | 0.0 | AY060587.1 Arabidopsis thaliana AT3g04420/T27C4_6 mRNA, complete cds. | |||
GenBank | BT000846 | 0.0 | BT000846.1 Arabidopsis thaliana At3g04420/T27C4_6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_566226.1 | 0.0 | NAC domain containing protein 48 | ||||
Swissprot | Q5PP28 | 1e-156 | NAC3_ARATH; NAC domain-containing protein 3 | ||||
TrEMBL | Q9M845 | 0.0 | Q9M845_ARATH; T27C4.6 protein | ||||
STRING | AT3G04420.1 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT3G04420.2 |
Entrez Gene | 819597 |
iHOP | AT3G04420 |
wikigenes | AT3G04420 |