PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT3G04410.1

Common Name

T27C4.5

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NAC

Protein Properties

Length: 76aa MW: 8725.54 Da PI: 4.4756

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT3G04410.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	26.5	1.7e-08	4	53	2	47
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.lelee..v.ikevdiykvePwdL 47 p+GfrF+Pt ee+v++yL++ + + ++++ + +++ + + P++L AT3G04410.1 4 PVGFRFRPTKEEIVDHYLRPTNFDGDtSHVDRniMfMQDNRNDYRPPNSL 53 89*****************9876665333333212244444444455656 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-8	3	57	IPR003441	NAC domain
PROSITE profile	PS51005	11.278	3	76	IPR003441	NAC domain
Pfam	PF02365	2.6E-6	4	34	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000191	anatomy	synergid

Sequence ? help Back to Top
Protein Sequence Length: 76 aa Download sequence Send to blast
MVNPVGFRFR PTKEEIVDHY LRPTNFDGDT SHVDRNIMFM QDNRNDYRPP NSLTGVFSDC 60 SSDDNDSDLL SPKTVS

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	18396878	1e-128
Genevisible	258598_at	1e-114
Expression Atlas	AT3G04410	-
AtGenExpress	AT3G04410	-
ATTED-II	AT3G04410	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT3G04410.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT3G04410

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	ATAC022287	2e-65	AC022287.9 Arabidopsis thaliana chromosome III BAC T27C4 genomic sequence, complete sequence.
GenBank	CP002686	2e-65	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_187091.1	1e-49	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
TrEMBL	Q9M846	3e-48	Q9M846_ARATH; NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
STRING	AT3G04410.1	5e-49	(Arabidopsis thaliana)

Link Out ? help Back to Top
Phytozome	AT3G04410.1
Entrez Gene	819596
iHOP	AT3G04410
wikigenes	AT3G04410

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Wuest SE, et al. Arabidopsis female gametophyte gene expression map reveals similarities between plant and animal gametes. Curr. Biol., 2010. 20(6): p. 506-12 [PMID:20226671]