PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G24681.1
Common NameF25P17.2, REM11
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 286aa    MW: 32038.7 Da    PI: 9.9468
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G24681.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.12.2e-15124206689
                  ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
           B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                   ++   + ++l+lp +f++++g+++ +  ++tl  ++  +W  +l    k+g+  l++GWk+ ++ang+++g+ ++++++++ ++
  AT2G24681.1 124 FTPEDIRDCILILPSQFIKANGINNLG--EITLLGQNRMKWFAYLLSMSKDGSLALGSGWKGICEANGVNTGEAFTLEYIDEqET 206
                  457778899************998544..8***************99999999**************************986344 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.024170IPR003340B3 DNA binding domain
SMARTSM010190.05470IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.9E-6775IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.61E-7767IPR015300DNA-binding pseudobarrel domain
CDDcd100171.68E-6866No hitNo description
Gene3DG3DSA:2.40.330.101.9E-13118205IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.221119219IPR003340B3 DNA binding domain
CDDcd100171.01E-14121203No hitNo description
SuperFamilySSF1019361.22E-15121205IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.3E-17121221IPR003340B3 DNA binding domain
PfamPF023621.0E-13123206IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MAWNLAIITL VGKDGTKLEA TLRRENRGLM CLGNGWKDLS ISNGLKSGKS FTLELILENG  60
TPMLSLVSTQ STSHKSQKRE CSKHSEKESI SAVPSKGKKN RKARSNREER RDSSSAIQNR  120
FVTFTPEDIR DCILILPSQF IKANGINNLG EITLLGQNRM KWFAYLLSMS KDGSLALGSG  180
WKGICEANGV NTGEAFTLEY IDEQETAHGR AQVCFYGVFP GKSVRSFASL RSKWNDLFYD  240
FLREQNLRVN PIIGVAICLC KHHYCNYNSC SLFKPRPKLS QKNLNS
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAT2G24681
AtGenExpressAT2G24681
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G24681.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G24681
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069540.0AC006954.8 Arabidopsis thaliana chromosome 2 clone F25P17 map mi238, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001189596.10.0AP2/B3-like transcriptional factor family protein
SwissprotP0CAP30.0REM11_ARATH; B3 domain-containing protein REM11
TrEMBLA0A178VQZ21e-149A0A178VQZ2_ARATH; Uncharacterized protein
STRINGAT2G24681.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142671121
Representative plantOGRP2682231
Publications ? help Back to Top
  1. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]