PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G20613.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GeBP | ||||||||
Protein Properties | Length: 135aa MW: 14945.1 Da PI: 4.4533 | ||||||||
Description | DNA-binding storekeeper protein-related transcriptional regulator | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 31.7 | 4.4e-10 | 110 | 135 | 2 | 27 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktg 27 +fqr+w+++Deiv+L G+id+k++ g AT2G20613.1 110 YFQRVWTDDDEIVVLEGFIDYKNDSG 135 79********************9976 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008150 | Biological Process | biological_process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MSHKRFNPLT ASSSDEDELE TPIREVEDSS SDEETDSDSD SELGKKDEVV TEVSALNNQE 60 SKSVKISEKS VAKRSRETHE AQASADVKKA KKVKKRGGGG GEEAETKKAY FQRVWTDDDE 120 IVVLEGFIDY KNDSG |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18399414 | 0.0 | ||||
Expression Atlas | AT2G20613 | - | ||||
AtGenExpress | AT2G20613 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G20613.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G20613 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC007048 | 0.0 | AC007048.5 Arabidopsis thaliana chromosome 2 clone F23N11 map mi148, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_179651.1 | 1e-91 | DNA-binding storekeeper protein-related transcriptional regulator | ||||
Swissprot | Q8S8D6 | 9e-93 | STKLG_ARATH; Probable transcription factor At2g20613 | ||||
TrEMBL | A0A178WF60 | 1e-28 | A0A178WF60_ARATH; Uncharacterized protein | ||||
STRING | AT2G20613.1 | 4e-91 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM313 | 28 | 181 |
Link Out ? help Back to Top | |
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Phytozome | AT2G20613.1 |
Entrez Gene | 816586 |
iHOP | AT2G20613 |
wikigenes | AT2G20613 |