PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT2G13150.1

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bZIP

Protein Properties

Length: 262aa MW: 29695.8 Da PI: 10.002

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT2G13150.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.7	1.4e-09	151	201	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 k rr kN e+A rs q+K++++ +Le k+ Le++N + ++++ l++ AT2G13150.1 151 KEVRRILKNQESAARSKQKKLQYMINLELKINFLENKNASIFEKIKLLEND 201 5667889*****************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.4E-10	147	211	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	2.7E-12	148	200	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.059	149	201	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.7E-10	151	202	No hit	No description
SuperFamily	SSF57959	1.29E-9	151	203	No hit	No description
CDD	cd14703	2.67E-13	153	203	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MNGSDNSTPS RPRSITQPSL AFSSLPPLSP SPSSSRRNSI PLMNPSASVE SRDSSIRVKK 60 KSLLPPLCVK RRAPKDDIEP FKRHYRSLSV DSCLSDLLKL PPSPNNVSSS RSVDGEQNAS 120 ELEFDTSVYT DDELNKIAKS TKLKEVASDP KEVRRILKNQ ESAARSKQKK LQYMINLELK 180 INFLENKNAS IFEKIKLLEN DKTMRMNEKK EIMIRIESLE QHAELRDALT EHLHVEIERL 240 KAVLISNEKG NEKSPKSRDD NM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	171	ARSKQKKLQ

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	71035033	0.0
Genevisible	265756_at	0.0
Expression Atlas	AT2G13150	-
AtGenExpress	AT2G13150	-
ATTED-II	AT2G13150	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT2G13150.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT2G13150

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006194	0.0	AC006194.4 Arabidopsis thaliana chromosome 2 clone T17A11 map GPC6, complete sequence.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_178956.1	0.0	Basic-leucine zipper (bZIP) transcription factor family protein
TrEMBL	Q9SL54	0.0	Q9SL54_ARATH; Basic-leucine zipper (BZIP) transcription factor family protein
STRING	AT2G13150.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19327	3	6
Representative plant	OGRP126	17	181

Link Out ? help Back to Top
Phytozome	AT2G13150.1
Entrez Gene	815800
iHOP	AT2G13150
wikigenes	AT2G13150

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Jakoby M, et al. bZIP transcription factors in Arabidopsis. Trends Plant Sci., 2002. 7(3): p. 106-11 [PMID:11906833] Dal Bosco C, et al. Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. J. Biol. Chem., 2004. 279(2): p. 1060-9 [PMID:14576160] Deppmann CD, et al. Dimerization specificity of all 67 B-ZIP motifs in Arabidopsis thaliana: a comparison to Homo sapiens B-ZIP motifs. Nucleic Acids Res., 2004. 32(11): p. 3435-45 [PMID:15226410] Deppmann CD,Alvania RS,Taparowsky EJ Cross-species annotation of basic leucine zipper factor interactions: Insight into the evolution of closed interaction networks. Mol. Biol. Evol., 2006. 23(8): p. 1480-92 [PMID:16731568] Tsugama D,Liu S,Takano T Analysis of functions of VIP1 and its close homologs in osmosensory responses of Arabidopsis thaliana. PLoS ONE, 2014. 9(8): p. e103930 [PMID:25093810]