PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT2G12900.1

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bZIP

Protein Properties

Length: 264aa MW: 30069.3 Da PI: 9.2951

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT2G12900.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24.6	5.7e-08	118	168	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 k+ rr kNRe A s qRK++++ Le ++k Le++N ++++ l+k AT2G12900.1 118 KKVRRILKNRELAASSKQRKLKYMIDLEHRIKFLENKNALIFEKIKLLEKD 168 8899**********************************9999999999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.3E-9	114	178	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	3.5E-14	115	167	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.255	116	179	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.5E-8	118	167	No hit	No description
SuperFamily	SSF57959	2.25E-9	118	174	No hit	No description
CDD	cd14703	5.88E-14	119	170	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005829	Cellular Component	cytosol
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MNGSDNITTP SGSRSMTQPS LASSSLPPLS PSSSTFRRNS LPSMSFSPSA PVESRDSSIK 60 VNKNPSLPPL VDGEEDASWL EFGSSDYTDD ELNKIAKSTK LQDIAKSTKL QEIVSDPKKV 120 RRILKNRELA ASSKQRKLKY MIDLEHRIKF LENKNALIFE KIKLLEKDKT ILMNEKKEIT 180 IQIESLEQQA QLRDALTEKL HVEIERLKVI TISNEKGSVE LQRLKMETCE VLQYRREFDR 240 SNMQGMDPNM FTWSQPNLGF YGQI

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	18397170	0.0
Genevisible	263994_at	0.0
Expression Atlas	AT2G12900	-
AtGenExpress	AT2G12900	-
ATTED-II	AT2G12900	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT2G12900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT2G12900

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006437	1e-115	AC006437.5 Arabidopsis thaliana chromosome 2 clone T19K21 map mi421, complete sequence.
GenBank	AC007155	1e-115	AC007155.16 Arabidopsis thaliana chromosome 2 clone T18E17 map PR1, complete sequence.
GenBank	CP002685	1e-115	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_565355.1	0.0	Basic-leucine zipper (bZIP) transcription factor family protein
TrEMBL	Q9SKG1	0.0	Q9SKG1_ARATH; BZIP transcription factor family protein
STRING	AT2G12900.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19327	3	6
Representative plant	OGRP126	17	181

Link Out ? help Back to Top
Phytozome	AT2G12900.1
Entrez Gene	815769
iHOP	AT2G12900
wikigenes	AT2G12900

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Jakoby M, et al. bZIP transcription factors in Arabidopsis. Trends Plant Sci., 2002. 7(3): p. 106-11 [PMID:11906833] Dal Bosco C, et al. Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. J. Biol. Chem., 2004. 279(2): p. 1060-9 [PMID:14576160] Deppmann CD, et al. Dimerization specificity of all 67 B-ZIP motifs in Arabidopsis thaliana: a comparison to Homo sapiens B-ZIP motifs. Nucleic Acids Res., 2004. 32(11): p. 3435-45 [PMID:15226410] Deppmann CD,Alvania RS,Taparowsky EJ Cross-species annotation of basic leucine zipper factor interactions: Insight into the evolution of closed interaction networks. Mol. Biol. Evol., 2006. 23(8): p. 1480-92 [PMID:16731568] Wagner R,Pfannschmidt T Eukaryotic transcription factors in plastids--Bioinformatic assessment and implications for the evolution of gene expression machineries in plants. Gene, 2006. 381: p. 62-70 [PMID:16934950] Tsugama D,Liu S,Takano T Analysis of functions of VIP1 and its close homologs in osmosensory responses of Arabidopsis thaliana. PLoS ONE, 2014. 9(8): p. e103930 [PMID:25093810]