PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G77950.1 | ||||||||
Common Name | AGL67 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 252aa MW: 29245.2 Da PI: 5.5086 | ||||||||
Description | AGAMOUS-like 67 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.1 | 1.2e-23 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krie ++nrq+tfskR++g++KKA+ELS+LCd++ a+++fs++++l +s AT1G77950.1 9 KRIEKSTNRQITFSKRKKGLIKKAYELSTLCDIDLALLMFSPSDRLCLFS 58 79*****************************************9997765 PP | |||||||
2 | K-box | 21.3 | 1.1e-08 | 123 | 195 | 9 | 81 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelq 81 +++++ e+l+qe+ +L+++++ ++e+R++ + + s++e++ e +L + l+++ +++++ll+++ e + AT1G77950.1 123 ATNSNVEELEQEVCRLQQQLQISEEELRKFEPDPMRLTSMEEIEACEANLINTLTRVVQRREHLLRKSCEAQS 195 67899*************************************************************9998764 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.0E-30 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.114 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.2E-26 | 2 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-21 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-22 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-21 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-21 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MGRVKLELKR IEKSTNRQIT FSKRKKGLIK KAYELSTLCD IDLALLMFSP SDRLCLFSGQ 60 TRIEDVLARY INLPDQEREN AIVFPDQSKR QGIQNKEYLL RTLEKLKIED DMALQINEPR 120 PEATNSNVEE LEQEVCRLQQ QLQISEEELR KFEPDPMRLT SMEEIEACEA NLINTLTRVV 180 QRREHLLRKS CEAQSNQQSM DGILLNDIVE DWGPEPEPKQ AHMIANSAHH SNQPSYDLLL 240 RRSNSSSNQN PK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 9e-18 | 1 | 91 | 1 | 92 | MEF2 CHIMERA |
6bz1_B | 9e-18 | 1 | 91 | 1 | 92 | MEF2 CHIMERA |
6bz1_C | 9e-18 | 1 | 91 | 1 | 92 | MEF2 CHIMERA |
6bz1_D | 9e-18 | 1 | 91 | 1 | 92 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 79384328 | 0.0 | ||||
Genevisible | 262185_at | 0.0 | ||||
Expression Atlas | AT1G77950 | - | ||||
AtGenExpress | AT1G77950 | - | ||||
ATTED-II | AT1G77950 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G77950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G77950 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT012128 | 0.0 | BT012128.1 Arabidopsis thaliana At1g77950 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001117616.1 | 0.0 | AGAMOUS-like 67 | ||||
Refseq | NP_001322357.1 | 0.0 | AGAMOUS-like 67 | ||||
Refseq | NP_001322358.1 | 0.0 | AGAMOUS-like 67 | ||||
Refseq | NP_177918.2 | 0.0 | AGAMOUS-like 67 | ||||
Swissprot | Q1PFC2 | 1e-106 | AGL66_ARATH; Agamous-like MADS-box protein AGL66 | ||||
TrEMBL | F4I8L6 | 0.0 | F4I8L6_ARATH; AGAMOUS-like 67 | ||||
STRING | AT1G77950.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2179 | 23 | 65 | Representative plant | OGRP16 | 17 | 761 |
Link Out ? help Back to Top | |
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Phytozome | AT1G77950.1 |
Entrez Gene | 844130 |
iHOP | AT1G77950 |
wikigenes | AT1G77950 |