PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G55950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GeBP | ||||||||
Protein Properties | Length: 203aa MW: 23413.6 Da PI: 8.601 | ||||||||
Description | DNA-binding storekeeper protein-related transcriptional regulator | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 92.5 | 4.6e-29 | 118 | 194 | 1 | 79 |
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkeps 79 k+fqr+ s++D+ivlLqG++df++++g+ ++dd+++f+++vk+ isf+++++q+++KirrLK+Kf +k++k +e+s AT1G55950.1 118 KYFQRILSDDDKIVLLQGMVDFQNDKGTISYDDMTGFIDTVKNIISFQANSRQFTTKIRRLKDKFVQKRNK--GVDENS 194 68********************************************************************9..444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.2E-17 | 120 | 190 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008150 | Biological Process | biological_process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MAKKNKRSQQ KNKCLKPEKD PSTVKRLLED PPRKKRYLQP LENPPTESYG DDEKMETEEE 60 GEKYLGKNLP ASAFIIVAAE RHDSDSYSET ELEKKICGSV VVAKMNDDKM VSTDTKKKYF 120 QRILSDDDKI VLLQGMVDFQ NDKGTISYDD MTGFIDTVKN IISFQANSRQ FTTKIRRLKD 180 KFVQKRNKGV DENSLANVEI YEI |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18405616 | 0.0 | ||||
Genevisible | 260600_at | 0.0 | ||||
Expression Atlas | AT1G55950 | - | ||||
AtGenExpress | AT1G55950 | - | ||||
ATTED-II | AT1G55950 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G55950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G55950 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC002304 | 0.0 | AC002304.3 Genomic sequence for Arabidopsis thaliana BAC F14J16 from chromosome I, complete sequence. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_175991.2 | 1e-148 | DNA-binding storekeeper protein-related transcriptional regulator | ||||
Swissprot | Q9LG15 | 1e-149 | STKLC_ARATH; Probable transcription factor At1g55950 | ||||
TrEMBL | A0A178WED3 | 1e-103 | A0A178WED3_ARATH; Uncharacterized protein | ||||
STRING | AT1G55950.1 | 1e-147 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM313 | 28 | 181 | Representative plant | OGRP4222 | 5 | 23 |
Link Out ? help Back to Top | |
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Phytozome | AT1G55950.1 |
Entrez Gene | 842046 |
iHOP | AT1G55950 |
wikigenes | AT1G55950 |