PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G54760.1 | ||||||||
Common Name | AGL85, T22H22.17 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 161aa MW: 18175.5 Da PI: 4.8392 | ||||||||
Description | AGAMOUS-like 85 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 21.5 | 3e-07 | 19 | 44 | 25 | 50 |
HHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 25 eELSvLCdaevaviifsstgklyeys 50 +ELS+LC+aeva + +s +gk y++ AT1G54760.1 19 NELSILCGAEVAFLGYSCSGKPYTFG 44 6***********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 9.657 | 18 | 47 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-7 | 19 | 43 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-9 | 19 | 60 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MKTDWSHYLS VEMESTISNE LSILCGAEVA FLGYSCSGKP YTFGSPSFQA VAERFLNREA 60 SSSLQRSVMN AHQQAKIQEL CKVYNRMVEE AKTEEAKVKK AAALAETMPV DEDAWWKVDP 120 KEVEDHEEAK KIMEKCEGLY EKLCNEAAAR IQRGDAENNN K |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 71035328 | 0.0 | ||||
Genevisible | 260050_at | 1e-100 | ||||
Expression Atlas | AT1G54760 | - | ||||
AtGenExpress | AT1G54760 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G54760.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G54760 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | T22H22 | 0.0 | AC005388.1 Sequence of BAC T22H22 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_175874.1 | 1e-117 | AGAMOUS-like 85 | ||||
TrEMBL | A0A178WBF1 | 1e-116 | A0A178WBF1_ARATH; AGL85 | ||||
TrEMBL | Q9ZVL8 | 1e-116 | Q9ZVL8_ARATH; AGAMOUS-like 85 | ||||
STRING | AT1G54760.1 | 1e-117 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4676 | 13 | 52 | Representative plant | OGRP16 | 17 | 761 |
Link Out ? help Back to Top | |
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Phytozome | AT1G54760.1 |
Entrez Gene | 841917 |
iHOP | AT1G54760 |
wikigenes | AT1G54760 |
Publications ? help Back to Top | |||
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