PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G51070.2 | ||||||||
Common Name | bHLH115 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 292aa MW: 33136 Da PI: 8.194 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.5 | 7.3e-11 | 136 | 182 | 4 | 53 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 ++ rE++RRdr+N++f eL ++l + + +K +K++i A++ +++ AT1G51070.2 136 SKACREKQRRDRLNDKFTELSSVLEPG---RTPKTDKVAIINDAIRMVNQ 182 5678**********************8...8**************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.023 | 132 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-12 | 136 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.17E-8 | 136 | 188 | No hit | No description |
Pfam | PF00010 | 1.7E-8 | 136 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.0E-11 | 137 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.9E-8 | 138 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MVSPENTNWL SDYPLIEGAF SDQNPTFPWQ IDGSATVRIG SYIWRSCYGC VITQLVFRCS 60 CCDRDIGLLH KSILCFFFCL RFAYVPLFPK EVDESRSLPI AKGSVEVDGF LCDADVIKEP 120 SSRKRIKTES CTGSNSKACR EKQRRDRLND KFTELSSVLE PGRTPKTDKV AIINDAIRMV 180 NQARDEAQKL KDLNSSLQEK IKELKDEKNE LRDEKQKLKV EKERIDQQLK AIKTQPQPQP 240 CFLPNPQTLS QAQAPGSKLV PFTTYPGFAM WQFMPPAAVD TSQDHVLRPP VA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.17182 | 0.0 | bud| flower| inflorescence| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 245746_at | 0.0 | ||||
Expression Atlas | AT1G51070 | - | ||||
AtGenExpress | AT1G51070 | - | ||||
ATTED-II | AT1G51070 | - |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G51070.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G51070 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF488632 | 0.0 | AF488632.1 Arabidopsis thaliana clone bHLH115 putative bHLH transcription factor mRNA, complete cds. | |||
GenBank | AY085619 | 0.0 | AY085619.1 Arabidopsis thaliana clone 16284 mRNA, complete sequence. | |||
GenBank | BT002433 | 0.0 | BT002433.1 Arabidopsis thaliana bHLH transcription factor, putative (At1g51070) mRNA, complete cds. | |||
GenBank | BT006273 | 0.0 | BT006273.1 Arabidopsis thaliana At1g51070 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001185192.1 | 0.0 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Swissprot | Q9C682 | 1e-135 | BH115_ARATH; Transcription factor bHLH115 | ||||
TrEMBL | F4I7Z3 | 0.0 | F4I7Z3_ARATH; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein | ||||
STRING | AT1G51070.2 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1437 | 28 | 90 | Representative plant | OGRP755 | 17 | 66 |
Link Out ? help Back to Top | |
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Phytozome | AT1G51070.2 |
Entrez Gene | 841529 |
iHOP | AT1G51070 |
wikigenes | AT1G51070 |