PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G49190.2 | ||||||||
Common Name | ARR19, RR19 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ARR-B | ||||||||
Protein Properties | Length: 622aa MW: 70839.9 Da PI: 5.0241 | ||||||||
Description | response regulator 19 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 62.9 | 6.1e-20 | 420 | 473 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPkti...lelmkvkgLtlehvkSHLQ 51 kpr+ Wt+eLH++F+ea+e +GG+ekA Pk + l+ m ++g+t+++v+SHLQ AT1G49190.2 420 KPRMTWTEELHQKFLEAIEIIGGIEKANPKVLvecLQEMRIEGITRSNVASHLQ 473 79****************************8622256799************** PP | |||||||
2 | Response_reg | 60.8 | 7.4e-21 | 36 | 142 | 1 | 107 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl+vd + + + +++q++++ y +v +d+e+al+ l +++++++++ D mpg+dGl++lk+i+++ +lp++++++ ++ e + +a +Ga AT1G49190.2 36 VLVVDTNFTTLLNMKQIMKQYAY-QVSIETDAEKALAFLtsCKHEINIVIWDFHMPGIDGLQALKSITSKL-DLPVVIMSDDNQTESVMKATFYGAC 130 89*********************.***999*******99778888**********************8866.9************************ PP EEEESS--HHHH CS Response_reg 96 dflsKpfdpeel 107 d+++Kp+++e + AT1G49190.2 131 DYVVKPVKEEVM 142 ******988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 1.24E-26 | 33 | 158 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 2.6E-27 | 34 | 161 | No hit | No description |
SMART | SM00448 | 7.4E-16 | 34 | 145 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 35.06 | 35 | 150 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 9.9E-18 | 36 | 143 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.68E-17 | 37 | 149 | No hit | No description |
SuperFamily | SSF46689 | 1.97E-10 | 418 | 474 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.2E-17 | 418 | 473 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.1E-17 | 420 | 474 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000156 | Molecular Function | phosphorelay response regulator activity | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000282 | anatomy | trichome |
Sequence ? help Back to Top |
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Protein Sequence Length: 622 aa Download sequence Send to blast |
MLVGKISGYE DNTRSLERET SEITSLLSQF PGNTNVLVVD TNFTTLLNMK QIMKQYAYQV 60 SIETDAEKAL AFLTSCKHEI NIVIWDFHMP GIDGLQALKS ITSKLDLPVV IMSDDNQTES 120 VMKATFYGAC DYVVKPVKEE VMANIWQHIV RKRLIFKPDV APPVQSDPAR SDRLDQVKAD 180 FKIVEDEPII NETPLITWTE EIQPVQSDLV QANKFDQVNG YSPIMNQDNM FNKAPPKPRM 240 TWTEVIQPVQ SNLVQTKEFG QLNDYSQIMN QDSMYNKAAT KPQLTWTEEI QPVQSGLVQA 300 NEFSKVNGYS QSMNQDSMFN KSATNPRLTW NELLQPVQSD LVQSNEFSQF SDYSQIMNED 360 NMFNKAAKKP RMTWSEVFQP VQSHLVPTDG LDRDHFDSIT INGGNGIQNM EKKQGKKPRK 420 PRMTWTEELH QKFLEAIEII GGIEKANPKV LVECLQEMRI EGITRSNVAS HLQVKKKTHT 480 LNIKHRINLE ENQIPQQTQG NGWATAYGTL APSLQGSDNV NTTIPSYLMN GPATLNQIQQ 540 NQYQNGFLTM NNNQIITNPP PPLPYLDHHH QQQHQSSPQF NYLMNNEELL QASGLSATDL 600 ELTYPSLPYD PQEYLINGYN YN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 474 | 478 | KKKTH |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 334183175 | 0.0 | ||||
Genevisible | 257492_at | 0.0 | ||||
Expression Atlas | AT1G49190 | - | ||||
AtGenExpress | AT1G49190 | - | ||||
ATTED-II | AT1G49190 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Detected in trichomes and siliques. {ECO:0000269|PubMed:15173562}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | member of Response Regulator: B- Type | |||||
UniProt | Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G49190.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G49190 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC016041 | 0.0 | AC016041.5 Genomic sequence for Arabidopsis thaliana BAC F27J15 from chromosome I, complete sequence. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001185179.1 | 0.0 | response regulator 19 | ||||
Swissprot | Q9M9B9 | 1e-159 | ARR19_ARATH; Putative two-component response regulator ARR19 | ||||
TrEMBL | A0A178VZW3 | 0.0 | A0A178VZW3_ARATH; RR19 | ||||
STRING | AT1G49190.2 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13137 | 16 | 29 |
Link Out ? help Back to Top | |
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Phytozome | AT1G49190.2 |
Entrez Gene | 841342 |
iHOP | AT1G49190 |
wikigenes | AT1G49190 |