PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G29560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 572aa MW: 68851.9 Da PI: 6.995 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.5 | 8.5e-07 | 254 | 273 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +Cr+f+r G+Ck+G+ C F H AT1G29560.1 254 ICRYFLR-GYCKFGSVCGFQH 273 7******.************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 7.357 | 227 | 241 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.4E-5 | 249 | 275 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.042 | 249 | 276 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-5 | 250 | 273 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.0E-5 | 253 | 274 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 572 aa Download sequence Send to blast |
MADAGDNQRR SDEKESISTE ETKENEDLGS GRNDTGHHVY NEGHEEVLEY LKQERLKDAD 60 MQRKRHETES KSIEGTTPDI RLSDSGKGSD EIQKADSVYK RSNADTRVSL PQQRRLKDVV 120 EAHRVRRETE SRLWHQERDR SLVWGGSEPR MRFDESTQGW RDSDYESKWR FHERTPDWDW 180 RDSESRMRSH ERTQDRRGSE SQGVFDERTE RRQEPVRWPG EECWCLRCRN GGSCRYNHPT 240 QLPQELPVRN RLQICRYFLR GYCKFGSVCG FQHIRDRDVA EPMYENWSFD VRTQRRYEIE 300 YSGFRPEKRA KTSLDSVEPD SRKRLEGLEN KREQENPQEP ERQRTEAQDN LQEFREQENP 360 QNQIQINTER QRTMAHDNLQ IVSDSRMHDP RRHDTELRLE REKMVNRELE KQRIEHLIDP 420 LVRRYMQAKR DKEVEQRERA SIESQRIVAQ EILRQQRLQG MRENQNVDSR MHDPRRHDTE 480 LRLEREKMVN RELEKQRIEP LIGPLVRRYM QAKRDKEVEQ RERASIESQR IVAQENLRQQ 540 RLQGMRENQN VDAHDQEKTQ ELGFKGKEGD GV |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 186479026 | 0.0 | ||||
Expression Atlas | AT1G29560 | - | ||||
AtGenExpress | AT1G29560 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G29560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G29560 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC068667 | 1e-178 | AC068667.6 Arabidopsis thaliana chromosome 1 BAC F15D2 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 1e-178 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_174249.2 | 0.0 | Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||
TrEMBL | B3H4U9 | 0.0 | B3H4U9_ARATH; Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||
STRING | AT1G29560.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM21009 | 2 | 2 |
Link Out ? help Back to Top | |
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Phytozome | AT1G29560.1 |
Entrez Gene | 839833 |
iHOP | AT1G29560 |
wikigenes | AT1G29560 |
Publications ? help Back to Top | |||
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