PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G25470.1
Common NameCRF12, ERF116, F2J7.8
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 287aa    MW: 31991.7 Da    PI: 4.5595
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G25470.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.33.9e-0882127453
          AP2   4 kGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                   GVr ++ +g+++AeI   +     + ++ +lg++ t+ eA ka++  + ++
  AT1G25470.1  82 VGVRPRP-SGKFAAEILNpF-----TkTKKWLGTYETPAEAEKAYVDKKVEY 127
                  69**999.7******99955.....3499****************9877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381235.1E-1171276IPR017392AP2/ERF transcription factor ERF/PTI6
SMARTSM003803.2E-479134IPR001471AP2/ERF domain
CDDcd000181.06E-1279120No hitNo description
PROSITE profilePS5103212.53680140IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-1082127IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.7E-1283121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MKSFVKPERD SLLRTVRIVF TDPDATDDSS SSSDEWLPKP RKVKRFVHEI TFLPQVSESS  60
QDRSNAVKTP RRKSTRQFKY PVGVRPRPSG KFAAEILNPF TKTKKWLGTY ETPAEAEKAY  120
VDKKVEYDAL ASSGSAVSSS VVTVTSQCLR SPTSASVSCV SADDLSKEKT SLNKDVAASG  180
DSTTKEVFTT FDFSDVKIPD LRFLAAEEDS MVSNANGAEL DFDCFLTDSN ILLDDYSLLE  240
NDINFSRFEN SLPSELPDCD FTEMEFQLDD FKFAYTDHLT TPPLGLV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.413350.0flower| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453361120.0
Genevisible255729_at0.0
Expression AtlasAT1G25470-
AtGenExpressAT1G25470-
ATTED-IIAT1G25470-
Functional Description ? help Back to Top
Source Description
TAIRencodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G25470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
IntActSearch Q8GW17
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G25470
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0792810.0AC079281.4 Arabidopsis thaliana chromosome 1 BAC F2J7 genomic sequence, complete sequence.
GenBankAK1191440.0AK119144.1 Arabidopsis thaliana At1g25470 mRNA for unknown protein, complete cds, clone: RAFL21-49-G19.
GenBankBT0052810.0BT005281.1 Arabidopsis thaliana At1g25470 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_173918.20.0AP2 domain-containing transcription factor family protein
RefseqNP_973912.10.0AP2 domain-containing transcription factor family protein
SwissprotQ8GW170.0EF116_ARATH; Ethylene-responsive transcription factor ERF116
TrEMBLA0A178WDZ80.0A0A178WDZ8_ARATH; Uncharacterized protein
STRINGAT1G25470.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151191619
Representative plantOGRP6161718
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Seki M, et al.
    Functional annotation of a full-length Arabidopsis cDNA collection.
    Science, 2002. 296(5565): p. 141-5
    [PMID:11910074]
  3. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  4. Nawy T, et al.
    Transcriptional profile of the Arabidopsis root quiescent center.
    Plant Cell, 2005. 17(7): p. 1908-25
    [PMID:15937229]
  5. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  6. Kong H, et al.
    Patterns of gene duplication in the plant SKP1 gene family in angiosperms: evidence for multiple mechanisms of rapid gene birth.
    Plant J., 2007. 50(5): p. 873-85
    [PMID:17470057]
  7. Hayden CA,Jorgensen RA
    Identification of novel conserved peptide uORF homology groups in Arabidopsis and rice reveals ancient eukaryotic origin of select groups and preferential association with transcription factor-encoding genes.
    BMC Biol., 2007. 5: p. 32
    [PMID:17663791]
  8. Arabidopsis Interactome Mapping Consortium
    Evidence for network evolution in an Arabidopsis interactome map.
    Science, 2011. 333(6042): p. 601-7
    [PMID:21798944]
  9. Reňák D,Dupl'áková N,Honys D
    Wide-scale screening of T-DNA lines for transcription factor genes affecting male gametophyte development in Arabidopsis.
    Sex. Plant Reprod., 2012. 25(1): p. 39-60
    [PMID:22101548]