PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G20710.1
Common NameF2D10.20, WOX10, WOX13B
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WOX
Protein Properties Length: 197aa    MW: 22400.2 Da    PI: 6.2451
Description WUSCHEL related homeobox 10
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G20710.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.41.4e-1977137257
                  T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  r+R+t+t++ql++Le+ +++ + +p+ ++++e++++l    ++ e++V+ WFqNrRa+ k+
  AT1G20710.1  77 RPRWTPTTTQLQILENIYKEgSGTPNPRRIKEITMELsehgQIMEKNVYHWFQNRRARSKR 137
                  89*****************99**************************************97 PP
2Wus_type_Homeobox104.66.3e-3476139265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +r+RWtPt++Q++iLe++yk+G  tPn ++i++it+eL+e+G+i++kNV++WFQNr+aR+++kq
        AT1G20710.1  76 TRPRWTPTTTQLQILENIYKEGSGTPNPRRIKEITMELSEHGQIMEKNVYHWFQNRRARSKRKQ 139
                        689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.14E-1573140IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.7E-1473140IPR009057Homeodomain-like
PROSITE profilePS5007113.7573138IPR001356Homeobox domain
SMARTSM003894.1E-1275142IPR001356Homeobox domain
PfamPF000463.1E-1777137IPR001356Homeobox domain
CDDcd000865.79E-986139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007275Biological Processmulticellular organism development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MEQESLNGRY GSRVMTDEQM ETLRKQIAIY AVLCDQLVFL HNSLSSVPLL SSGMNPMRGE  60
YFDPMVASSS AHGMSTRPRW TPTTTQLQIL ENIYKEGSGT PNPRRIKEIT MELSEHGQIM  120
EKNVYHWFQN RRARSKRKQP PTTTITSSQA DDAAVTTTEE RGRCGDDSGG FESYEHILFP  180
SPDLGIEHLL NRDKFID
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130138RRARSKRKQ
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO183949020.0
Expression AtlasAT1G20710-
AtGenExpressAT1G20710-
Functional Description ? help Back to Top
Source Description
TAIREncodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box.
UniProtPotential transcription factor that plays a central role during developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G20710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G20710
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0692510.0AC069251.5 Genomic sequence for Arabidopsis thaliana BAC F2D10 from chromosome I, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_173494.11e-148WUSCHEL related homeobox 10
SwissprotQ9LM831e-149WOX10_ARATH; Putative WUSCHEL-related homeobox 10
TrEMBLA0A178WD561e-144A0A178WD56_ARATH; WOX13B
STRINGAT1G20710.11e-147(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122111732
Representative plantOGRP18731639
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. R
    Rapid identification of Arabidopsis insertion mutants by non-radioactive detection of T-DNA tagged genes.
    Plant J., 2002. 32(2): p. 243-53
    [PMID:12383089]
  3. Haecker A, et al.
    Expression dynamics of WOX genes mark cell fate decisions during early embryonic patterning in Arabidopsis thaliana.
    Development, 2004. 131(3): p. 657-68
    [PMID:14711878]
  4. Hrub
    Expression of beta-galactosidase and beta-xylosidase genes during microspore and pollen development.
    Planta, 2005. 220(6): p. 931-40
    [PMID:15517348]
  5. Hirakawa Y,Kondo Y,Fukuda H
    TDIF peptide signaling regulates vascular stem cell proliferation via the WOX4 homeobox gene in Arabidopsis.
    Plant Cell, 2010. 22(8): p. 2618-29
    [PMID:20729381]
  6. Hanada K, et al.
    Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana.
    Mol. Biol. Evol., 2011. 28(1): p. 377-82
    [PMID:20736450]
  7. Zhang X,Zong J,Liu J,Yin J,Zhang D
    Genome-wide analysis of WOX gene family in rice, sorghum, maize, Arabidopsis and poplar.
    J Integr Plant Biol, 2010. 52(11): p. 1016-26
    [PMID:20977659]