PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G15790.2
Common NameF7H2.13
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 179aa    MW: 20323.1 Da    PI: 7.364
Description
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G15790.2genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000441211391230
                  HHHHHHHHHHHHHCTSCCC CS
          HLH  12 RRdriNsafeeLrellPka 30 
                  R ++iN  +++L++++P++
  AT1G15790.2 121 RQKNINALLDTLKKIVPHS 139
                  889**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.246.203.6E-5480IPR003101Coactivator CBP, KIX domain
PfamPF169872.8E-33584IPR003101Coactivator CBP, KIX domain
PfamPF169874.9E-24110179IPR003101Coactivator CBP, KIX domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
GO:0003712Molecular Functiontranscription cofactor activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000084anatomyplant sperm cell
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025195anatomypollen tube cell
PO:0025281anatomypollen
PO:0001017developmental stageM germinated pollen stage
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MDTTGDWRTQ FPSASRSRIV NKIMETQLKQ LPFIRPEGTN ELRKIAVRFE EKLFNNASNQ  60
TEYLRQICMK MLNMETKSQN AAGSSSADDN TPPLVPEPSV PNNEPAVNTG DWRTQQPQDS  120
RQKNINALLD TLKKIVPHSG KEGIDELMRI AVSLEELIFN SAINQEDYLG KISLKMRTM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.155670.0inflorescence| root
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible259489_at0.0
Expression AtlasAT1G15790-
AtGenExpressAT1G15790-
ATTED-IIAT1G15790-
Functional Description ? help Back to Top
Source Description
UniProtComponent of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G15790.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G15790
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3324240.0AF332424.1 Arabidopsis thaliana clone C00094 (e) unknown protein (At1g15790) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001322875.11e-131mediator of RNA polymerase II transcription subunit 15a-like protein
RefseqNP_173031.21e-131mediator of RNA polymerase II transcription subunit 15a-like protein
RefseqNP_973837.11e-131mediator of RNA polymerase II transcription subunit 15a-like protein
SwissprotF4I1718e-35MD15A_ARATH; Mediator of RNA polymerase II transcription subunit 15a
TrEMBLA0A384K8Y61e-130A0A384K8Y6_ARATH; Uncharacterized protein
TrEMBLQ9LMQ51e-130Q9LMQ5_ARATH; F7H2.13 protein
STRINGAT1G15790.21e-130(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Yang ZN,Ye XR,Molina J,Roose ML,Mirkov TE
    Sequence analysis of a 282-kilobase region surrounding the citrus Tristeza virus resistance gene (Ctv) locus in Poncirus trifoliata L. Raf.
    Plant Physiol., 2003. 131(2): p. 482-92
    [PMID:12586873]
  2. Ascencio-Ib
    Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.
    Plant Physiol., 2008. 148(1): p. 436-54
    [PMID:18650403]
  3. Wang Y, et al.
    Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.
    Plant Physiol., 2008. 148(3): p. 1201-11
    [PMID:18775970]
  4. Ito J, et al.
    Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism.
    J. Proteome Res., 2011. 10(4): p. 1571-82
    [PMID:21166475]
  5. Mathur S,Vyas S,Kapoor S,Tyagi AK
    The Mediator complex in plants: structure, phylogeny, and expression profiling of representative genes in a dicot (Arabidopsis) and a monocot (rice) during reproduction and abiotic stress.
    Plant Physiol., 2011. 157(4): p. 1609-27
    [PMID:22021418]
  6. Bienvenut WV, et al.
    Comparative large scale characterization of plant versus mammal proteins reveals similar and idiosyncratic N-α-acetylation features.
    Mol. Cell Proteomics, 2012. 11(6): p. M111.015131
    [PMID:22223895]
  7. Canet JV,Dobón A,Tornero P
    Non-recognition-of-BTH4, an Arabidopsis mediator subunit homolog, is necessary for development and response to salicylic acid.
    Plant Cell, 2012. 24(10): p. 4220-35
    [PMID:23064321]
  8. Kim MJ,Jang IC,Chua NH
    The Mediator Complex MED15 Subunit Mediates Activation of Downstream Lipid-Related Genes by the WRINKLED1 Transcription Factor.
    Plant Physiol., 2016. 171(3): p. 1951-64
    [PMID:27246098]
  9. Dahiya P,Bhat DS,Thakur JK
    Expression of AtMed15 of Arabidopsis in yeast causes flocculation and increases ethanol production in yeast culture.
    Sci Rep, 2016. 6: p. 27967
    [PMID:27306498]
  10. Medina-Puche L, et al.
    β-carbonic anhydrases play a role in salicylic acid perception in Arabidopsis.
    PLoS ONE, 2017. 12(7): p. e0181820
    [PMID:28753666]
  11. Kumar V, et al.
    KIX domain of AtMed15a, a Mediator subunit of Arabidopsis, is required for its interaction with different proteins.
    Plant Signal Behav, 2018. 13(2): p. e1428514
    [PMID:29341856]