PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT33784
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HD-ZIP
Protein Properties Length: 622aa    MW: 67815.3 Da    PI: 6.9729
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT33784genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.82.5e-201772156
              TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
              +++ +++t+ q+++Le++F+++++p++++r +L+++lgL+ rq+k+WFqNrR+++k
  EMT33784 17 KKRYHRHTPRQIQQLEAMFKECPHPDENQRLHLSRELGLEPRQIKFWFQNRRTQMK 72
              678899***********************************************998 PP
2START162.43.4e-511473712206
               HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS
     START   2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 
               +a +a++e++++a+a+e +Wvk +   e +n d++ ++f++ ++        ++e +r+s +v   +  lv  ++d++ +W+e ++    +a t++v+ +g
  EMT33784 147 MATRAMDEFIRLAQAGEHLWVKAAggrEVLNVDTYDSIFAKPGSssfrgpdVHVEGSRDSCLVLTSAIALVDMFMDSS-KWTEFFPtivtRARTIDVLVNG 246
               5789***********************99999999999987766899*******************************.********************** PP

               .....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHH CS
     START  89 .....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hwllr 182
                    + l+lm+ el ++sp+vp R+f f+Ry+rq ++g w+i+dvSvd +++    ++ +R+++lpSg+li ++sng+skvtwveh++ ++++p  +l+r
  EMT33784 247 magrsESLVLMYEELHVMSPVVPtREFCFLRYCRQIEQGLWAIADVSVDLQRDARYGAPPARSRRLPSGCLIADMSNGYSKVTWVEHMETEDKTPiNQLYR 347
               *****************************************************988********************************************* PP

               HHHHHHHHHHHHHHHHHTXXXXXX CS
     START 183 slvksglaegaktwvatlqrqcek 206
                lv sg+a+ga +w+a+lqr ce+
  EMT33784 348 DLVLSGAAFGAHRWLAALQRACER 371
               **********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.03E-19772IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-211273IPR009057Homeodomain-like
PROSITE profilePS5007117.3621474IPR001356Homeobox domain
SMARTSM003891.5E-191578IPR001356Homeobox domain
CDDcd000864.52E-191672No hitNo description
PfamPF000466.6E-181772IPR001356Homeobox domain
PROSITE patternPS0002704972IPR017970Homeobox, conserved site
PROSITE profilePS5084847.661137374IPR002913START domain
SuperFamilySSF559617.33E-33138372No hitNo description
CDDcd088753.88E-107141370No hitNo description
SMARTSM002342.2E-41146371IPR002913START domain
PfamPF018521.9E-43147371IPR002913START domain
Gene3DG3DSA:3.30.530.202.4E-5251337IPR023393START-like domain
SuperFamilySSF559611.18E-17389613No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MDFGDDLVPG SEAHRRKKRY HRHTPRQIQQ LEAMFKECPH PDENQRLHLS RELGLEPRQI  60
KFWFQNRRTQ MKLDRVSSLT SKYLGRPITQ LPSMQPLSMS SLELSVGGLG SPVALGPALD  120
LDPLGGSSPF QLPAPVSEME RPMMAEMATR AMDEFIRLAQ AGEHLWVKAA GGREVLNVDT  180
YDSIFAKPGS SSFRGPDVHV EGSRDSCLVL TSAIALVDMF MDSSKWTEFF PTIVTRARTI  240
DVLVNGMAGR SESLVLMYEE LHVMSPVVPT REFCFLRYCR QIEQGLWAIA DVSVDLQRDA  300
RYGAPPARSR RLPSGCLIAD MSNGYSKVTW VEHMETEDKT PINQLYRDLV LSGAAFGAHR  360
WLAALQRACE RHACLVTPPH RDIAGVTLEG KRSMMRLSQR MVGSFCASLS ASQQHRWTTL  420
SGPGAGVDDA AGVRVMVHRS TDPGQPSGVV LSAATSIWLP VSCDRVFAFV SDENTRSQWD  480
VLSHGNPVQE VSRIPNGSHP GNSISLLRGL NASQNSMLIL QESCADASGS LVVYAPIDLP  540
AANVVMSGED PSAIPLLPSG FTILPDGRAS SSTGSVVTVA FQILVSSLPS SRLNAESVAT  600
VNSLIGTTVE QIKAALNCGS SH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3766540.0AK376654.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3130F06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186741.10.0homeobox-leucine zipper protein ROC8-like
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLN1R4W90.0N1R4W9_AEGTA; Homeobox-leucine zipper protein ROC8
STRINGEMT337840.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17920.11e-169homeodomain GLABROUS 12