PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT33779

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

C2H2

Protein Properties

Length: 786aa MW: 85689.1 Da PI: 5.8933

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT33779	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F r nL+ H r H EMT33779 6 FVCEVCGKGFQRDQNLQLHRRGH 28 89******************988 PP
2	zf-C2H2	15.6	4.7e-05	85	106	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 Cp Cgk++ + +Lk H +t+ EMT33779 85 ACPRCGKRYAVQADLKAHAKTC 106 6******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.04E-8	5	28	No hit	No description
SMART	SM00355	0.014	6	28	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.7E-5	6	28	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.635	6	28	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	8	28	IPR007087	Zinc finger, C2H2
SMART	SM00355	85	49	79	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.8E-5	72	105	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.04E-8	79	104	No hit	No description
SMART	SM00355	90	84	104	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.663	84	112	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 786 aa Download sequence Send to blast
MATNRFVCEV CGKGFQRDQN LQLHRRGHNL PWRLRQRAPG PAPPRGRVYV CPEPGCVHHS 60 PARALGDLTG IKKHFCRKHG EKRWACPRCG KRYAVQADLK AHAKTCGTRE YRCDCGTLFT 120 RRDSFVTHRA FCGALVEETG RVLAVPAPPS PRPPDLEEVE ENVDKDKEKE EENVDKHKEK 180 EDEGGKGGED ENETSAVAEV DEPQHVEAAM EEPQPQRIPS PPSPTPPSPT PQEQQPMVAV 240 VRNLDEPVVV VEPIVDIKQE EEDKRDEDVC FQEADKYNVA ELEDSNLPDN DTPMPPCFLP 300 SPSDAIGTDG SSTSCGTVSS ASNSIAPATT TSTFAGLFAS ATTSTTPQSR SLRDLIGVDP 360 TFLCLAIGTP SSLFSQTDAS NPGTFAPPPA PHISATALLQ KAAEAGASQA GTSFLKEFGL 420 ASSSSSTPSR PPQGRFIDSS STQSQQPQGR FIECSSTQSR LPQDRFIDSS STQSRLPHDR 480 FTDSISTQSR LPQDRFIESS STHSRLPQDR FIESSSTQSR LPQDRFIESS STQSRLPQDR 540 FIDSSTQFRL PQDRYINNSM PSKLSQGRFM DTSLPSQQLL PQGRFLDNSP ASNLSQGRFF 600 DNSQPSNPTQ GRFFVNSPPS NLPHGRFTDY SSPGRLPQGM YIDGLPQSRL PQGRYIDNSP 660 QAKLPQGGRF VDSNPQQWHQ RSNNHNQLMD MEPGPMVSGS LGLGLAYEGS NPRLPDLMMG 720 QSPLFGPKPA TLDFLGLGIG GTMGGSTASG GLPALMVGGE LDMGSAAQPP SPWEEAQRKT 780 NGRTIL

Sequence ? help Back to Top

Protein Sequence Length: 786 aa Download sequence Send to blast

MATNRFVCEV CGKGFQRDQN LQLHRRGHNL PWRLRQRAPG PAPPRGRVYV CPEPGCVHHS  60
PARALGDLTG IKKHFCRKHG EKRWACPRCG KRYAVQADLK AHAKTCGTRE YRCDCGTLFT  120
RRDSFVTHRA FCGALVEETG RVLAVPAPPS PRPPDLEEVE ENVDKDKEKE EENVDKHKEK  180
EDEGGKGGED ENETSAVAEV DEPQHVEAAM EEPQPQRIPS PPSPTPPSPT PQEQQPMVAV  240
VRNLDEPVVV VEPIVDIKQE EEDKRDEDVC FQEADKYNVA ELEDSNLPDN DTPMPPCFLP  300
SPSDAIGTDG SSTSCGTVSS ASNSIAPATT TSTFAGLFAS ATTSTTPQSR SLRDLIGVDP  360
TFLCLAIGTP SSLFSQTDAS NPGTFAPPPA PHISATALLQ KAAEAGASQA GTSFLKEFGL  420
ASSSSSTPSR PPQGRFIDSS STQSQQPQGR FIECSSTQSR LPQDRFIDSS STQSRLPHDR  480
FTDSISTQSR LPQDRFIESS STHSRLPQDR FIESSSTQSR LPQDRFIESS STQSRLPQDR  540
FIDSSTQFRL PQDRYINNSM PSKLSQGRFM DTSLPSQQLL PQGRFLDNSP ASNLSQGRFF  600
DNSQPSNPTQ GRFFVNSPPS NLPHGRFTDY SSPGRLPQGM YIDGLPQSRL PQGRYIDNSP  660
QAKLPQGGRF VDSNPQQWHQ RSNNHNQLMD MEPGPMVSGS LGLGLAYEGS NPRLPDLMMG  720
QSPLFGPKPA TLDFLGLGIG GTMGGSTASG GLPALMVGGE LDMGSAAQPP SPWEEAQRKT  780
NGRTIL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-29	80	142	3	65	Zinc finger protein JACKDAW
5b3h_F	2e-29	80	142	3	65	Zinc finger protein JACKDAW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK357417	0.0	AK357417.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1052O01.
GenBank	AK362175	0.0	AK362175.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2003A13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020155452.1	0.0	protein indeterminate-domain 1-like
TrEMBL	N1R4W7	0.0	N1R4W7_AEGTA; Zinc finger protein MAGPIE
STRING	EMT33779	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11829	28	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.2	3e-77	C2H2 family protein