PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT33702

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

HSF

Protein Properties

Length: 329aa MW: 36032.2 Da PI: 6.6079

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT33702	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	73.3	4.6e-23	139	200	2	63
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFk 63 Fl+k+ye+++d+++++++sw g+sfvv+d + f+ +Lp+yFkh nf+SFvRQLn+Y + EMT33702 139 FLNKTYEVVDDHSTDTIVSWGVAGSSFVVWDAHAFSMVLLPRYFKHCNFSSFVRQLNTYSPS 200 9**********************************************************633 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	6.5E-24	135	203	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.0E-22	135	215	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	9.25E-20	135	201	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	2.7E-19	139	206	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.9E-13	139	162	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.9E-13	177	189	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.9E-13	190	202	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MALLSRTRKF WADCDGSELA QSPLPGDLDR KIPMPRPLPC NRNRQGTPRK LSPLQKLTVP 60 HKQLTSQAKK KARALFGRLI MDPFHGIVKE EEFDFAGAAA DGYSPSSWGS SQSSWAGGGA 120 LAELPRPMDG LGEAGPTPFL NKTYEVVDDH STDTIVSWGV AGSSFVVWDA HAFSMVLLPR 180 YFKHCNFSSF VRQLNTYSPS FLQMLVQRQD QSRRKELAEA LLSKKRGRPI EYLLPRNGET 240 SSAASYSAAA RGYGPGLADG SDGRRADGED TESFWKELLS LGLEERHREA GGGGGGGSGA 300 EVDDDVDDEV DELVQSLYHL SPNRPHSHQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-13	130	197	17	87	Heat shock factor protein 1
5d5v_B	1e-13	130	197	17	87	Heat shock factor protein 1
5d5v_D	1e-13	130	197	17	87	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK357022	1e-137	AK357022.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1044E17.
GenBank	AK357855	1e-137	AK357855.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1063H19.
GenBank	AK358380	1e-137	AK358380.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1075F04.
GenBank	AK362018	1e-137	AK362018.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2001N17.
GenBank	AK377082	1e-137	AK377082.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3147M16.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020200656.1	2e-70	heat stress transcription factor A-2a-like
Refseq	XP_020200657.1	2e-70	heat stress transcription factor A-2a-like
Swissprot	Q84MN7	4e-43	HFA2A_ORYSJ; Heat stress transcription factor A-2a
TrEMBL	N1R5G6	0.0	N1R5G6_AEGTA; Heat stress transcription factor A-2a
STRING	EMT33702	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	1e-32	heat shock transcription factor A2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744] Mittal D,Madhyastha DA,Grover A Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually. Plant Sci., 2012. 197: p. 102-13 [PMID:23116677]