PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT33698
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 470aa    MW: 52008.8 Da    PI: 6.7832
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT33698genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.32.7e-11156193745
                      HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       Ed+ l + ++++G ++W t+a+ ++ gR++ qc+ rw+
         EMT33698 156 VEDKALTQMINKHGLKNWQTVAHAIP-GRSAPQCRQRWR 193
                      59************************.***********8 PP
2Myb_DNA-binding38.52.7e-12202244145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +W+++E+++l++a++ +G++ W+   ++++ gRt   +k++w+
         EMT33698 202 KEAWSEQEELRLIRAHQIYGTK-WREMVKHFP-GRTNGAIKEYWR 244
                      579*******************.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.5E-6149198IPR001005SANT/Myb domain
CDDcd001675.23E-11155193No hitNo description
SuperFamilySSF466892.38E-21156243IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-17156205IPR009057Homeodomain-like
PfamPF002491.2E-9156193IPR001005SANT/Myb domain
PROSITE profilePS500908.583157196IPR017877Myb-like domain
PROSITE profilePS5129418.2197251IPR017930Myb domain
SMARTSM007173.4E-10201249IPR001005SANT/Myb domain
PfamPF002491.1E-10202244IPR001005SANT/Myb domain
CDDcd001678.36E-10204244No hitNo description
Gene3DG3DSA:1.10.10.606.5E-16206252IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MAPQNYTCDR QVNRARHKFG YRVRHRNVPG LASGACSLNF WVVDGDAGVS EMGKLLQPML  60
LADSGVLPSH VTDRRFDAEG AQNDCLAEDP GKQLVWCESE GRGALNGQLT IASLLFRVNV  120
KVEVIDQLLF SNPPTVCLME ISVPKCYITI EDKKKVEDKA LTQMINKHGL KNWQTVAHAI  180
PGRSAPQCRQ RWRYKIDSAI NKEAWSEQEE LRLIRAHQIY GTKWREMVKH FPGRTNGAIK  240
EYWRGPMKRK LNSYLSSGLL EQFPDILENL SGTQNNSLDI LKGTKVSDIL NDTEGSSERN  300
EMSSAVPRIS ISEVGFTEVG ENADVPGGES ADFIYARVAS AKAPENIIAR SEQHAKTRRK  360
LDLLSSPVEL KSSSHEVNSQ RPLQQREQMS PAVGGVSPSN GCHDVLPKIL SECAKPVLSP  420
TGSYQPSDVH SAGTSDPCSL ELDISDLMEM SYFDNLLIFP PGSPHDGNSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-2215525312110B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519050.0JF951905.1 Triticum aestivum clone TaMYB22 R2R3-MYB protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172077.10.0transcriptional activator Myb-like
RefseqXP_020172078.10.0transcriptional activator Myb-like
RefseqXP_020172079.10.0transcriptional activator Myb-like
RefseqXP_020172080.10.0transcriptional activator Myb-like
RefseqXP_020172082.10.0transcriptional activator Myb-like
TrEMBLN1R4L60.0N1R4L6_AEGTA; Myb-related protein 3R-1
STRINGEMT336980.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP142631723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.11e-36myb domain protein 3r-4