PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT33573 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | G2-like | ||||||||
Protein Properties | Length: 266aa MW: 29524.7 Da PI: 8.7356 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 48.6 | 1.8e-15 | 7 | 36 | 26 | 55 |
G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 +AtPktil++m+vkgLtl h+kSHLQkYR+ EMT33573 7 EATPKTILRTMGVKGLTLFHLKSHLQKYRM 36 7****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.27E-5 | 6 | 37 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.4E-10 | 7 | 37 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.5E-13 | 7 | 37 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 7.4E-20 | 141 | 186 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MDDSHGEATP KTILRTMGVK GLTLFHLKSH LQKYRMGKQT GKETPEQSKD VWTRFSVCCK 60 EPLSANFLKA SRYTALAVDA IPSNCSPHTA VHVYCVMVNM NHKFCNDFMK KFRTRSYLLD 120 AQGGMSLSPR VSTQDAKESQ EVKEALRAQM EMQRSLHEQV EVQKHVDIRM DAYTTYINTL 180 LEKACKIVSE QFASSGFSVS DQSLPELSSG GIMCGTATDA LSSSVFHQLS VSSINMHSPG 240 GKPSPSGMEG QLLLQRSPEF KRKSSC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363665 | 0.0 | AK363665.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2017P09. | |||
GenBank | AK367354 | 0.0 | AK367354.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2055J10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195363.1 | 1e-103 | protein PHR1-LIKE 2-like isoform X2 | ||||
Refseq | XP_020195364.1 | 1e-103 | protein PHR1-LIKE 2-like isoform X2 | ||||
Refseq | XP_020195365.1 | 1e-103 | protein PHR1-LIKE 2-like isoform X2 | ||||
Refseq | XP_020195366.1 | 1e-103 | protein PHR1-LIKE 2-like isoform X2 | ||||
Refseq | XP_020195367.1 | 1e-103 | protein PHR1-LIKE 2-like isoform X2 | ||||
TrEMBL | N1R4H3 | 0.0 | N1R4H3_AEGTA; Myb family transcription factor APL | ||||
STRING | EMT33573 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3427 | 38 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13640.1 | 2e-22 | G2-like family protein |