PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT33527 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 335aa MW: 36321.3 Da PI: 6.8442 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.8 | 2.9e-14 | 22 | 66 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G g+W+ I+r + Rt+ q+ s+ qky EMT33527 22 PWTEEEHKLFLMGLKKYGRGDWRNISRNYVTSRTPTQVASHAQKY 66 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.582 | 15 | 71 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.94E-17 | 17 | 71 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-17 | 18 | 69 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 7.5E-12 | 19 | 65 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-12 | 19 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-11 | 22 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.43E-11 | 22 | 67 | No hit | No description |
SMART | SM00717 | 3.8 | 256 | 308 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.15E-6 | 258 | 302 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.855 | 258 | 302 | IPR017877 | Myb-like domain |
CDD | cd00167 | 0.00661 | 259 | 302 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MAAGGNGKRG RGADQERKKG VPWTEEEHKL FLMGLKKYGR GDWRNISRNY VTSRTPTQVA 60 SHAQKYFIRL NSGGKDKRRS SIHDITTVNI PDDDHASNTN PSPSPPSALT ATSSAPEQFG 120 ALVDSKPPPP LGGNHRFMPA HLCNAASSSL SVDQGLLGAA AAQPPSEKAV SSSSVHEEGG 180 ENHTTSHVLL QESASVTFED SGIWVFFSFD KEARTPACAS TYAHNHTYQR FMGDRVKGNP 240 SSFCFLRTPK GDEWSGGGAW SLEENKLFKE ALVRVDGDVA DRWELVASLP SGKTVADVMM 300 HYDDPGIDVC FIEAELVPFP HYNAGDSSSA FRKVG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951936 | 0.0 | JF951936.1 Triticum aestivum clone TaMYB53 MYB-related protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154949.1 | 6e-98 | transcription factor DIVARICATA-like | ||||
TrEMBL | N1R5D1 | 0.0 | N1R5D1_AEGTA; Myb-like protein J | ||||
STRING | EMT33527 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2274 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 1e-44 | MYB family protein |