PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT33395 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | G2-like | ||||||||
Protein Properties | Length: 514aa MW: 57239 Da PI: 7.1303 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 80.4 | 2.2e-25 | 140 | 194 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 kpr+ Wt LH++F+ea++q+ G ++A+Pk+ilelm+v+ L++e+++SHLQkYRl+ EMT33395 140 KPRMTWTIALHNKFLEAINQI-GLDRAVPKKILELMNVDYLSRENIASHLQKYRLH 194 79*******************.********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50110 | 11.137 | 1 | 83 | IPR001789 | Signal transduction response regulator, receiver domain |
Gene3D | G3DSA:3.40.50.2300 | 1.8E-5 | 11 | 46 | No hit | No description |
SuperFamily | SSF52172 | 1.57E-9 | 16 | 86 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 9.5E-7 | 47 | 103 | No hit | No description |
PROSITE profile | PS51294 | 9.272 | 137 | 196 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.43E-18 | 138 | 197 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.5E-26 | 139 | 198 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-24 | 140 | 194 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 514 aa Download sequence Send to blast |
MATMSGDRAA EDKFPEGLRV LVVDDDRVCL KVLEALLRHC KYQLLSVDCD KKVVMKGIDH 60 GASDFMVKPV RTHELKNIWQ HVQRWRNPKA ISHISDHDND VQRVQPATTD KSKYSGNKRN 120 VGDDSSENNE GTHISAIHRK PRMTWTIALH NKFLEAINQI GLDRAVPKKI LELMNVDYLS 180 RENIASHLQK YRLHLKRVKS NPSGDAYERW NSSYNMNNKG NFMHNHEHGR WIVSFGDTAS 240 WSTNKYGSTG HLAPPMNIQS NLYMGSYLHD GRMPKYVGKL PSDARRFTGF ADPPVSLYDN 300 IPNKIMSDEF PSFNYSNSCS DIMRGKLMEI SKGKSPSILQ SSFANTTVGG GRSLVASQVN 360 FPHSNQLESY AMSSGRLPLQ NEKTPFISNT TSVGGFTEQM APFNIASNIS SVGTMLNGSS 420 ALDASRTSTN DTHLGNGGRT TSMLHNLQTD DFVSLTRLHD GGDGASIVPT QEGTLNQQPL 480 NDHLNEISAF SMDDIFSNMH VEDFTGDDAI VEEA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 4e-22 | 138 | 198 | 3 | 63 | ARR10-B |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182593.1 | 0.0 | two-component response regulator ORR24-like | ||||
Refseq | XP_020199001.1 | 0.0 | two-component response regulator ORR24-like | ||||
TrEMBL | N1R5L3 | 0.0 | N1R5L3_AEGTA; Two-component response regulator ARR12 | ||||
STRING | EMT33395 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15285 | 4 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 5e-37 | response regulator 12 |