PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT33384

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

NF-YC

Protein Properties

Length: 393aa MW: 44521.7 Da PI: 8.8547

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT33384	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	143.5	5.1e-45	219	321	2	101
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 l++fw++q ie+atd+k+h + l ri+ki+kade v+misaeaPv++skace++ le+t+r+w+ ++enkr+tlkksd+aaav+rtd++dfl di+p d EMT33384 219 LQQFWAQQrseIEQATDIKKHPVQLKRIRKIMKADEGVHMISAEAPVVFSKACEMLTLEMTMRAWMVTKENKRQTLKKSDVAAAVARTDVYDFLADIIPLD 319 89***99999*************************************************************************************99 PP NF-YC 100 el 101 e+ EMT33384 320 EM 321 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51375	11.203	19	53	IPR002885	Pentatricopeptide repeat
Pfam	PF01535	2.5E-5	22	51	IPR002885	Pentatricopeptide repeat
TIGRFAMs	TIGR00756	1.9E-6	22	54	IPR002885	Pentatricopeptide repeat
SuperFamily	SSF47113	6.54E-23	213	312	IPR009072	Histone-fold
Pfam	PF00808	1.1E-14	242	303	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.0E-28	243	317	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MPDRLPDAVR LFEELKKWDL ETCNVMISCY ARSGLVEQAL GFFVMALRNG VLPTEFTFAS 60 VLRWSSCFGL LKQGGQIHAL VYQRSLKHAR ELFNGVCVKD LLIISIYRRM EELCHPAALA 120 IKVGGRFRSN MDKRKILDAW AVHIRCKRKQ DAKFVVAYNG PGAYTGPQVS IACQKDGLGN 180 LSLQWVMLLV DQLVVMSHLV SEQSRHYQQQ LQQLHQRRLQ QFWAQQRSEI EQATDIKKHP 240 VQLKRIRKIM KADEGVHMIS AEAPVVFSKA CEMLTLEMTM RAWMVTKENK RQTLKKSDVA 300 AAVARTDVYD FLADIIPLDE MKEEGVGLHR AGPPPPPLGA PAGAYPYYYP PQLQVPGAAM 360 VHGGQQVPQG HLPHVWIDLQ EQQEKEDQQS ESG

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MPDRLPDAVR LFEELKKWDL ETCNVMISCY ARSGLVEQAL GFFVMALRNG VLPTEFTFAS  60
VLRWSSCFGL LKQGGQIHAL VYQRSLKHAR ELFNGVCVKD LLIISIYRRM EELCHPAALA  120
IKVGGRFRSN MDKRKILDAW AVHIRCKRKQ DAKFVVAYNG PGAYTGPQVS IACQKDGLGN  180
LSLQWVMLLV DQLVVMSHLV SEQSRHYQQQ LQQLHQRRLQ QFWAQQRSEI EQATDIKKHP  240
VQLKRIRKIM KADEGVHMIS AEAPVVFSKA CEMLTLEMTM RAWMVTKENK RQTLKKSDVA  300
AAVARTDVYD FLADIIPLDE MKEEGVGLHR AGPPPPPLGA PAGAYPYYYP PQLQVPGAAM  360
VHGGQQVPQG HLPHVWIDLQ EQQEKEDQQS ESG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-37	226	317	3	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269\|PubMed:26542958}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269\|PubMed:26542958}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q655V5	4e-66	NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBL	N1R4H9	0.0	N1R4H9_AEGTA; Nuclear transcription factor Y subunit C-2
STRING	EMT33384	0.0	(Aegilops tauschii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	5e-48	nuclear factor Y, subunit C2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]