PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT33356 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB | ||||||||
Protein Properties | Length: 261aa MW: 27641.7 Da PI: 8.0175 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.4 | 3.4e-08 | 14 | 45 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 rg W++eEde+l + v+ +G g+W+++a+ g EMT33356 14 RGLWSPEEDEKLMNHVAPYGYGCWSSVAKIAG 45 788*************************9877 PP | |||||||
2 | Myb_DNA-binding | 39.9 | 9.5e-13 | 46 | 88 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++++ E++l+++++ G++ W+ Ia+ ++ gRt++++k++w++ EMT33356 46 GPFSQGEEDLIIHLHSIRGNK-WSQIAAQLP-GRTDNEVKNFWNS 88 799******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-11 | 8 | 42 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.25E-19 | 11 | 86 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-11 | 13 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-6 | 14 | 45 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.189 | 40 | 94 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-19 | 46 | 91 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-11 | 46 | 88 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.00E-8 | 47 | 90 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MSKRPGATKK RLKRGLWSPE EDEKLMNHVA PYGYGCWSSV AKIAGGPFSQ GEEDLIIHLH 60 SIRGNKWSQI AAQLPGRTDN EVKNFWNSII KKKLRQRRID PAIHKPLAHA GAAAAATPVS 120 RTAVFSEAEL ILSSPVGTQP MPPLVSAESY VYSRGSMDGA GGVVGGCSDD GSLSSLSGYN 180 NNQTADFAGY LDADALHGGV IPSVWGSSTL NWMAGVSPGG AVNTNATTHE PCCNNNNPSN 240 RGSGFESSTT QSSSNHHLPD Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-15 | 12 | 94 | 5 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353785 | 0.0 | AK353785.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1002L23. | |||
GenBank | AK358210 | 0.0 | AK358210.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1071D01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154053.1 | 1e-136 | transcription factor MYB3-like | ||||
TrEMBL | N1R4X2 | 0.0 | N1R4X2_AEGTA; Transcription factor MYB86 | ||||
STRING | EMT33356 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3092 | 33 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 2e-43 | myb domain protein 86 |