PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT33280

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

NAC

Protein Properties

Length: 228aa MW: 25606.4 Da PI: 5.0152

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT33280	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.8	8.7e-53	6	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.... 95 lppGfrFhPtdeelv++yLk+k++g ++el ++i+evd+yk+ePwdL k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd+ ++++ EMT33280 6 LPPGFRFHPTDEELVNYYLKRKIHGLHIEL-DIIPEVDLYKCEPWDLAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRVMTQQhhgg 105 79**************************.99**********84335556888******************************999988877 PP NAM 96 .....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++g+kktLv+y+grap+g++tdWvmheyrl EMT33280 106 ggaggGARAIGMKKTLVYYRGRAPQGVRTDWVMHEYRL 143 777665666*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.68E-62	4	167	IPR003441	NAC domain
PROSITE profile	PS51005	58.864	6	166	IPR003441	NAC domain
Pfam	PF02365	5.8E-30	7	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MAPVGLPPGF RFHPTDEELV NYYLKRKIHG LHIELDIIPE VDLYKCEPWD LAEKSFLPSR 60 DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRVMTQ QHHGGGGAGG GARAIGMKKT 120 LVYYRGRAPQ GVRTDWVMHE YRLDDKDSED TIAIQDTYAL CRVFKKNAIC AEEYYQTPSP 180 DVPAGSTSGG ADADADDDAD KDDSWMQFIS EDAWCSSTAA EESTSCAG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-51	1	168	12	167	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-51	1	168	12	167	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-51	1	168	12	167	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-51	1	168	12	167	NO APICAL MERISTEM PROTEIN
4dul_A	4e-51	1	168	12	167	NAC domain-containing protein 19
4dul_B	4e-51	1	168	12	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK251493	0.0	AK251493.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf127o16, mRNA sequence.
GenBank	AK359507	0.0	AK359507.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1098E06.
GenBank	AK361030	0.0	AK361030.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1130O02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020186595.1	1e-141	NAC domain-containing protein 86-like
Swissprot	A4VCM0	4e-81	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	M8C7K2	1e-170	M8C7K2_AEGTA; NAC domain-containing protein 74
STRING	EMT33280	1e-171	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3713	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-103	NAC domain containing protein 57

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]