PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT33279
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NAC
Protein Properties Length: 217aa    MW: 25195.2 Da    PI: 6.7585
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT33279genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1761.1e-5461331128
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
               lppGfrFhPtdeelv++yLk+kv+g+++el ++i+evd+yk+ePw+L  k  + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd+++   +++ 
  EMT33279   6 LPPGFRFHPTDEELVNYYLKRKVHGQSIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGCRTNRATRAGYWKSTGKDRSINY-QKRS 104
               79****************************.99**************84335556888*************************************9.9999 PP

       NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
               +g+kktLvfy+grap+g +++Wvmheyr+
  EMT33279 105 IGMKKTLVFYQGRAPQGIRSNWVMHEYRI 133
               ***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-644157IPR003441NAC domain
PROSITE profilePS5100559.7656156IPR003441NAC domain
PfamPF023651.3E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MAPVGLPPGF RFHPTDEELV NYYLKRKVHG QSIELDIIPE VDLYKCEPWE LAEKSFLPSR  60
DPEWYFFGPR DRKYPNGCRT NRATRAGYWK STGKDRSINY QKRSIGMKKT LVFYQGRAPQ  120
GIRSNWVMHE YRIEESECNN TMGVQDSYAL CRVFKKNVPA GEFEKQGECS SSQAKANQEQ  180
VTDFEDAGES STANENDKDN SWMQFIVEDL WCSNKTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-56116012169NO APICAL MERISTEM PROTEIN
1ut4_B8e-56116012169NO APICAL MERISTEM PROTEIN
1ut7_A8e-56116012169NO APICAL MERISTEM PROTEIN
1ut7_B8e-56116012169NO APICAL MERISTEM PROTEIN
3swm_A9e-56116015172NAC domain-containing protein 19
3swm_B9e-56116015172NAC domain-containing protein 19
3swm_C9e-56116015172NAC domain-containing protein 19
3swm_D9e-56116015172NAC domain-containing protein 19
3swp_A9e-56116015172NAC domain-containing protein 19
3swp_B9e-56116015172NAC domain-containing protein 19
3swp_C9e-56116015172NAC domain-containing protein 19
3swp_D9e-56116015172NAC domain-containing protein 19
3ulx_A9e-56215611168Stress-induced transcription factor NAC1
4dul_A8e-56116012169NAC domain-containing protein 19
4dul_B8e-56116012169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00363DAPTransfer from AT3G17730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1375964e-72AC137596.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 9 clone OSJNBb0031H05, complete sequence.
GenBankAP0055644e-72AP005564.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1228_C03, complete sequence.
GenBankAP0149654e-72AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126174e-72CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186594.11e-165NAC domain-containing protein 86-like
SwissprotQ9FFI52e-86NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A3B6MWA81e-163A0A3B6MWA8_WHEAT; Uncharacterized protein
TrEMBLA0A453LKT41e-163A0A453LKT4_AEGTS; Uncharacterized protein
TrEMBLM8CFV61e-163M8CFV6_AEGTA; NAC domain-containing protein 74
STRINGEMT332791e-164(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37133879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-111NAC domain containing protein 57
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]