PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT33279 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | NAC | ||||||||
Protein Properties | Length: 217aa MW: 25195.2 Da PI: 6.7585 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 176 | 1.1e-54 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeelv++yLk+kv+g+++el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd+++ +++ EMT33279 6 LPPGFRFHPTDEELVNYYLKRKVHGQSIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGCRTNRATRAGYWKSTGKDRSINY-QKRS 104 79****************************.99**************84335556888*************************************9.9999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g+kktLvfy+grap+g +++Wvmheyr+ EMT33279 105 IGMKKTLVFYQGRAPQGIRSNWVMHEYRI 133 ***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-64 | 4 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.765 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-30 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MAPVGLPPGF RFHPTDEELV NYYLKRKVHG QSIELDIIPE VDLYKCEPWE LAEKSFLPSR 60 DPEWYFFGPR DRKYPNGCRT NRATRAGYWK STGKDRSINY QKRSIGMKKT LVFYQGRAPQ 120 GIRSNWVMHE YRIEESECNN TMGVQDSYAL CRVFKKNVPA GEFEKQGECS SSQAKANQEQ 180 VTDFEDAGES STANENDKDN SWMQFIVEDL WCSNKTK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-56 | 1 | 160 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-56 | 1 | 160 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-56 | 1 | 160 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-56 | 1 | 160 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-56 | 1 | 160 | 15 | 172 | NAC domain-containing protein 19 |
3swm_B | 9e-56 | 1 | 160 | 15 | 172 | NAC domain-containing protein 19 |
3swm_C | 9e-56 | 1 | 160 | 15 | 172 | NAC domain-containing protein 19 |
3swm_D | 9e-56 | 1 | 160 | 15 | 172 | NAC domain-containing protein 19 |
3swp_A | 9e-56 | 1 | 160 | 15 | 172 | NAC domain-containing protein 19 |
3swp_B | 9e-56 | 1 | 160 | 15 | 172 | NAC domain-containing protein 19 |
3swp_C | 9e-56 | 1 | 160 | 15 | 172 | NAC domain-containing protein 19 |
3swp_D | 9e-56 | 1 | 160 | 15 | 172 | NAC domain-containing protein 19 |
3ulx_A | 9e-56 | 2 | 156 | 11 | 168 | Stress-induced transcription factor NAC1 |
4dul_A | 8e-56 | 1 | 160 | 12 | 169 | NAC domain-containing protein 19 |
4dul_B | 8e-56 | 1 | 160 | 12 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00363 | DAP | Transfer from AT3G17730 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137596 | 4e-72 | AC137596.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 9 clone OSJNBb0031H05, complete sequence. | |||
GenBank | AP005564 | 4e-72 | AP005564.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1228_C03, complete sequence. | |||
GenBank | AP014965 | 4e-72 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 4e-72 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186594.1 | 1e-165 | NAC domain-containing protein 86-like | ||||
Swissprot | Q9FFI5 | 2e-86 | NAC86_ARATH; NAC domain-containing protein 86 | ||||
TrEMBL | A0A3B6MWA8 | 1e-163 | A0A3B6MWA8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453LKT4 | 1e-163 | A0A453LKT4_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8CFV6 | 1e-163 | M8CFV6_AEGTA; NAC domain-containing protein 74 | ||||
STRING | EMT33279 | 1e-164 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3713 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17730.1 | 1e-111 | NAC domain containing protein 57 |
Publications ? help Back to Top | |||
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