PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT33252 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | GRF | ||||||||
Protein Properties | Length: 299aa MW: 33558.5 Da PI: 9.0383 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 45 | 1.9e-14 | 74 | 100 | 1 | 27 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkkl 27 d+epgrCrRtDGKkWRCs+++ +++k+ EMT33252 74 DPEPGRCRRTDGKKWRCSKEAAQDSKY 100 79***********************98 PP | |||||||
2 | QLQ | 61.2 | 2.8e-21 | 13 | 48 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FTaaQ q+L++Q+l+yKyL+a++PvPp+Ll++i++ EMT33252 13 TFTAAQYQELEQQALIYKYLVAGVPVPPDLLLPIRR 48 6*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.2E-11 | 12 | 48 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.801 | 13 | 48 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.9E-15 | 14 | 47 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 14.767 | 74 | 121 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.2E-11 | 75 | 100 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MSGARWAARR PATFTAAQYQ ELEQQALIYK YLVAGVPVPP DLLLPIRRGF DSLASRFYHH 60 HALGYGSYFG KKLDPEPGRC RRTDGKKWRC SKEAAQDSKY SAYGFRTSAL EEHNQFISAA 120 MDTAMDNYSW RLMPSQPSSF SLASYPMLGT LGDLDQSAIC SLAKTEREPL SFGGGGGFED 180 DESAVKQENQ TLRPFFDEWP KDRDSWPELQ DHDSNHNSNA FSATKLSISI PVTSSDFSTT 240 AGSRSPHGRV EETTGRGRIM RRKAKACIAW YYTSSPRDRI AIAWAIGFGW MDHGRRRGT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK250947 | 1e-163 | AK250947.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf96d10, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164180.1 | 2e-91 | growth-regulating factor 3-like | ||||
Swissprot | Q6AWY6 | 1e-55 | GRF3_ORYSJ; Growth-regulating factor 3 | ||||
TrEMBL | M8CZU7 | 0.0 | M8CZU7_AEGTA; Uncharacterized protein | ||||
STRING | EMT33252 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2463 | 34 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-28 | growth-regulating factor 5 |