PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT33189

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

MYB

Protein Properties

Length: 294aa MW: 32821.6 Da PI: 6.6444

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT33189	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	63.7	3.6e-20	27	74	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd+llvd++ ++G g+W++ ar+ g++Rt+k+c++rw++yl EMT33189 27 RGAWTAEEDLLLVDYISRHGEGRWNSLARCAGLRRTGKSCRLRWLNYL 74 89********************************************97 PP
2	Myb_DNA-binding	49.9	7.1e-16	80	123	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg T+eE++l++d++ ++G++ W++Ia++++ Rt++++k++w++ EMT33189 80 RGHITPEEQLLILDLHSRWGNR-WSKIAQHLP-WRTDNEIKNYWRT 123 6778****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	23.334	22	78	IPR017930	Myb domain
SuperFamily	SSF46689	1.8E-29	25	121	IPR009057	Homeodomain-like
SMART	SM00717	8.7E-16	26	76	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-17	27	74	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.5E-23	28	81	IPR009057	Homeodomain-like
CDD	cd00167	2.17E-12	29	74	No hit	No description
PROSITE pattern	PS00175	0	42	51	IPR001345	Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profile	PS51294	17.397	79	129	IPR017930	Myb domain
SMART	SM00717	7.5E-14	79	127	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-14	80	123	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-21	82	127	IPR009057	Homeodomain-like
CDD	cd00167	1.85E-10	84	123	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008152	Biological Process	metabolic process
GO:0003677	Molecular Function	DNA binding
GO:0003824	Molecular Function	catalytic activity

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MDTGLAMNVL PMSPAGSSAV TTGDLRRGAW TAEEDLLLVD YISRHGEGRW NSLARCAGLR 60 RTGKSCRLRW LNYLRPDVRR GHITPEEQLL ILDLHSRWGN RWSKIAQHLP WRTDNEIKNY 120 WRTRVQKHAR QLGCDVNSDR FRQVVRLVWM PRLLERIQAE SSSSAAAASE YVALPVAGES 180 QSYHCFNHAS SECWTAVVAM SPDTSSTPRY SLSSTEASHG GHFPEWGSAA ATANIEGSMM 240 HSCSGEGGAV GGDHHVFPGD KLNESWSELL AASDVPGFEF EDSLWSLEDI YSYR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-22	18	127	18	126	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269\|PubMed:22301384}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269\|PubMed:22301384}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ663861	1e-152	JQ663861.1 Thinopyrum intermedium R2R3 MYB protein (MYB2R-1) mRNA, complete cds.
GenBank	JX683795	1e-152	JX683795.1 Thinopyrum intermedium R2R3 MYB transcription factor (MYB2R-1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020153392.1	0.0	myb-related protein 305-like
Swissprot	Q10MB4	2e-83	MYB2_ORYSJ; Transcription factor MYB2
TrEMBL	M8CFJ4	0.0	M8CFJ4_AEGTA; Myb-related protein 305
STRING	EMT33189	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP198	38	330

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G48000.1	1e-73	myb domain protein 112

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yang A,Dai X,Zhang WH A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice. J. Exp. Bot., 2012. 63(7): p. 2541-56 [PMID:22301384] Chen X, et al. The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway. Plant Cell Physiol., 2014. 55(3): p. 604-19 [PMID:24399239] Lv Y, et al. New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis. Plant Cell Environ., 2016. 39(3): p. 556-70 [PMID:26381647] Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]