PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT33073 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | SRS | ||||||||
Protein Properties | Length: 124aa MW: 12421.6 Da PI: 6.1288 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 83.3 | 6.1e-26 | 3 | 55 | 102 | 154 |
DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + ++P+evsseavfrcvr++ vd++e+e+aYqt+vsigGhvfkGiL+d G+++ EMT33073 3 ADRFPREVSSEAVFRCVRLGPVDEAEAEVAYQTTVSIGGHVFKGILHDVGPDT 55 578***********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 5.1E-23 | 4 | 54 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 3.5E-24 | 5 | 53 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MAADRFPREV SSEAVFRCVR LGPVDEAEAE VAYQTTVSIG GHVFKGILHD VGPDTSITGG 60 TRTAHHAAEG SSPSTAAAGG AEGGSGSTGA AAVSSSAVVM DPYPTPGPYG AYGGAPFFHG 120 HHPR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373525 | 1e-159 | AK373525.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3033N03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156435.1 | 1e-80 | protein SHI RELATED SEQUENCE 1-like | ||||
TrEMBL | A0A453RQF5 | 2e-81 | A0A453RQF5_AEGTS; Uncharacterized protein | ||||
STRING | EMT33073 | 5e-82 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1354 | 35 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18120.1 | 4e-19 | SHI-related sequence 4 |