PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT33003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | NAC | ||||||||
Protein Properties | Length: 408aa MW: 43465.8 Da PI: 9.3552 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168 | 3.2e-52 | 33 | 165 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...... 95 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l++ EMT33003 33 LPPGFRFHPTDEELVVHYLKKKAAKVPLPV-TIIAEVDLYKFDPWELPEKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILASgtgcgl 132 79****************************.89***************988899****************************************9877777 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +e+ g+kk Lvfy+g+ pkg kt+W+mheyrl EMT33003 133 VREKLGVKKALVFYRGKPPKGLKTNWIMHEYRL 165 6677***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-61 | 30 | 206 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.729 | 33 | 206 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-27 | 34 | 165 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MGSSDSSSGS AQKAARHQHE PPPPRQRGSA PELPPGFRFH PTDEELVVHY LKKKAAKVPL 60 PVTIIAEVDL YKFDPWELPE KATFGEQEWY FFSPRDRKYP NGARPNRAAT SGYWKATGTD 120 KPILASGTGC GLVREKLGVK KALVFYRGKP PKGLKTNWIM HEYRLTDASG STTTSRPPPP 180 PPVTGGSRAA ASLRLDDWVL CRIYKKINKA AAGDQQRSME CEDSVEDAVT AYPLYATAGM 240 AGAGAHGSNY ASSSLLHHQD SHFLDGLFTA DDAGLSAGAT SLSHLAAAAR ASPAPTKQFL 300 APSSSTPFNW LEASAAGILP QARNFPGFNR SRNVGNMSLS STADMAGAAG NAVNAMSAFM 360 NPLPVQDGTY HQHHVILGAP LAPEATAGAA TSGFQHHAVQ ISGVNWNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-72 | 25 | 209 | 5 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-B2) and one extra pseudogene (NAM-B1) (PubMed:17124321). {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM820889 | 0.0 | KM820889.1 Triticum aestivum cultivar Chinese Spring NAC transcription factor NAM-D1 (NAM-D1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020187501.1 | 0.0 | NAC transcription factor NAM-A1 | ||||
Swissprot | A0SPJ3 | 0.0 | NAMA1_TRITD; NAC transcription factor NAM-A1 | ||||
TrEMBL | A0A3B6QB09 | 0.0 | A0A3B6QB09_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453N953 | 0.0 | A0A453N953_AEGTS; Uncharacterized protein | ||||
TrEMBL | F8SJ36 | 0.0 | F8SJ36_WHEAT; NAC transcription factor NAM-D1 | ||||
TrEMBL | M8CFK3 | 0.0 | M8CFK3_AEGTA; NAC domain-containing protein 18 | ||||
STRING | EMT33003 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7572 | 36 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 1e-87 | NAC domain containing protein 25 |
Publications ? help Back to Top | |||
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