PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT32784 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | HB-other | ||||||||
Protein Properties | Length: 149aa MW: 17685.8 Da PI: 6.131 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.2 | 7.6e-20 | 21 | 76 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t+eq++ Lee F+k+ yp++++ ++L ++lgL+ +q++ WFqN+R+++k EMT32784 21 RKRQRRHTPEQIRKLEESFQKCGYPDEAQSAQLGRELGLENKQIRSWFQNHRTQMK 76 566779***********************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-19 | 8 | 59 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.23E-17 | 8 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.86 | 18 | 78 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-15 | 19 | 82 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.43E-14 | 21 | 76 | No hit | No description |
Pfam | PF00046 | 2.0E-17 | 21 | 76 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.7E-4 | 60 | 105 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MDMGDHQEGG SDSQQQLQER RKRQRRHTPE QIRKLEESFQ KCGYPDEAQS AQLGRELGLE 60 NKQIRSWFQN HRTQMKVEYE RAENLFLREE NTRLLSENMV MREVLKNFIC LNPNCIAKHY 120 IDQQEELDKE NARLKAGSLL CATSFQDEL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169319.1 | 1e-107 | homeobox-leucine zipper protein ROC8-like | ||||
Swissprot | Q69T58 | 2e-41 | ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8 | ||||
TrEMBL | A0A3B6TLS6 | 1e-106 | A0A3B6TLS6_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453R2I4 | 1e-106 | A0A453R2I4_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453R2Y8 | 1e-106 | A0A453R2Y8_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8CEG7 | 1e-106 | M8CEG7_AEGTA; Homeobox-leucine zipper protein ROC8 | ||||
STRING | EMT32784 | 1e-107 | (Aegilops tauschii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 1e-28 | homeodomain GLABROUS 11 |