PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT32783 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | HB-other | ||||||||
Protein Properties | Length: 136aa MW: 15734.6 Da PI: 6.3507 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 32.1 | 2e-10 | 21 | 64 | 1 | 44 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqV 44 r++ +++t+eq++ Lee ++k+ +p++ + ++L ++lgL+++q+ EMT32783 21 RKRQRRHTPEQIQKLEESYKKSDHPNEIQCAQLGRELGLETKQI 64 677889*************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-11 | 8 | 65 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.69E-8 | 9 | 65 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.2E-8 | 21 | 64 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.45E-6 | 21 | 64 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MDIGDHQQGG SDSQQQLQES RKRQRRHTPE QIQKLEESYK KSDHPNEIQC AQLGRELGLE 60 TKQIEHERLE NRFLRWENMS LRAEIMAVRE ALKNSATCPN CLGVAKDCID QQELNRENAR 120 LKAGLLHCTT SIQDEP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169320.1 | 4e-84 | homeobox-leucine zipper protein ROC8-like | ||||
Swissprot | Q69T58 | 7e-30 | ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8 | ||||
TrEMBL | M8CF16 | 3e-95 | M8CF16_AEGTA; Homeobox-leucine zipper protein ROC8 | ||||
STRING | EMT32783 | 5e-96 | (Aegilops tauschii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 6e-22 | homeodomain GLABROUS 11 |