PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT32713 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | bZIP | ||||||||
Protein Properties | Length: 318aa MW: 34575.9 Da PI: 6.6438 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 29.3 | 1.8e-09 | 96 | 137 | 11 | 52 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 11 qkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 NR A r++R++Kka ++ Lee+v+ L+a N++L k+l++ EMT32713 96 SGNRAAVRKYREKKKAHTALLEEEVAHLKAVNQQLVKKLQSH 137 44**********************************999864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.7E-9 | 86 | 153 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.0E-13 | 86 | 154 | No hit | No description |
Pfam | PF07716 | 4.4E-14 | 88 | 143 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14686 | 6.39E-12 | 89 | 145 | No hit | No description |
SuperFamily | SSF57959 | 1.42E-7 | 92 | 138 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MDDGDIDFSN PETFLCEAMG NDPPASCSMG TYFDDILNGD TDHLACTHTH TCNPPVHDLA 60 HHTHTCVHVH TKILSASDDA AETSESLPES KKQRPSGNRA AVRKYREKKK AHTALLEEEV 120 AHLKAVNQQL VKKLQSHSAL EAEVARLRCL LVDIRGRIEG EIGTFPYQRT VKSNDFVDQG 180 SFLGGAQVMN SCGFRCNDQL YCNPGMQQAR TMDDDGVMSG QVLGQGAGDS MGCVKPDGSM 240 APPAEPPTVP TNLRAPLWSH VQIIEKSPGG GNTKWKCDYC GHEALSSYSR VSAHLLKKTG 300 NHGIHACKKA TVDILNPF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK253086 | 0.0 | AK253086.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf120g05, mRNA sequence. | |||
GenBank | AK353584 | 0.0 | AK353584.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1001E08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020163267.1 | 1e-167 | basic leucine zipper 19-like | ||||
Swissprot | Q8VY76 | 2e-68 | BZP19_ARATH; Basic leucine zipper 19 | ||||
TrEMBL | M8CET5 | 0.0 | M8CET5_AEGTA; Uncharacterized protein | ||||
STRING | EMT32713 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4175 | 35 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35040.1 | 3e-58 | bZIP family protein |
Publications ? help Back to Top | |||
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