PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT32698
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 421aa    MW: 47202.2 Da    PI: 6.327
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT32698genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12.1e-18126172148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd +lv++v+q+G + W+ Ia++++ gR +kqc++rw+++l
         EMT32698 126 KGQWTLEEDRKLVKLVEQFGLRKWSQIAQMLP-GRVGKQCRERWHNHL 172
                      799*****************************.*************97 PP
2Myb_DNA-binding50.16.4e-16178220145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ W++eEd  l++ +k+ G++ W+ Ia++++ gRt++++k++w+
         EMT32698 178 KDTWSEEEDMVLIQTHKEVGNK-WAEIAKRLP-GRTENSIKNHWN 220
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.601121176IPR017930Myb domain
SuperFamilySSF466897.61E-32123219IPR009057Homeodomain-like
SMARTSM007172.4E-16125174IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-29127179IPR009057Homeodomain-like
PfamPF139218.9E-20129186No hitNo description
CDDcd001676.83E-16129172No hitNo description
SMARTSM007172.5E-15177225IPR001005SANT/Myb domain
PROSITE profilePS5129420.287177227IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-21180225IPR009057Homeodomain-like
CDDcd001672.27E-12180223No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006863Biological Processpurine nucleobase transport
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MDFGCFQPHA GSCDDMPLDF HVQQSAHYDL HSLDRSFEPA GGSIGPFAAF YPDYYPQGTA  60
TKAIVGDTSS VVHSSGPHLP LLTPKLEVSH LIGGGLGSYK TYEMSRRFLP RKKASSKALK  120
RANVVKGQWT LEEDRKLVKL VEQFGLRKWS QIAQMLPGRV GKQCRERWHN HLRPNIKKDT  180
WSEEEDMVLI QTHKEVGNKW AEIAKRLPGR TENSIKNHWN ATKRRQFARR RTRTSAKNPK  240
SGTLLQNYIK SLGIGSSKVT AAPLAPKEPP LSPSSPAPPT QNLAQVNDSW SESNPSSTMI  300
TQGLFSTDDR EADSWEEILV PTCDDFSVDM CDGLFDTKED AQYPVYSIDD DVDMDYIFNH  360
MDYTIKIDHE IDMEMAWCDG ALANIESGSS PLVTAVGPTE IKTVQVKEEM DLVELVTRTQ  420
T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C8e-461242262104C-Myb DNA-Binding Domain
1msf_C8e-461242262104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184036.10.0myb-related protein Myb4-like
TrEMBLA0A453QTF50.0A0A453QTF5_AEGTS; Uncharacterized protein
TrEMBLM8CER80.0M8CER8_AEGTA; Transcription factor MYB98
STRINGEMT326980.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-59myb domain protein 98