PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT32656 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ARR-B | ||||||||
Protein Properties | Length: 654aa MW: 71419.9 Da PI: 6.3456 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.1 | 1.9e-28 | 213 | 266 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl EMT32656 213 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRL 266 79*******************.********************************8 PP | |||||||
2 | Response_reg | 78.4 | 2.6e-26 | 25 | 133 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl vdD+p+ +++l+++l++ +y +v+++ ++ al+ll+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++ +ge + +l+ + Ga EMT32656 25 VLAVDDDPVCLKVLEVLLRRCQY-HVTTTNQAATALRLLRENKdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKSVLKGITHGAC 119 799********************.***************99999********************87754.558************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ +eel++ EMT32656 120 DYLLKPVRIEELRN 133 ************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 9.8E-178 | 1 | 654 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 5.4E-41 | 22 | 161 | No hit | No description |
SuperFamily | SSF52172 | 6.26E-35 | 22 | 149 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 5.6E-31 | 23 | 135 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 41.858 | 24 | 139 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 4.8E-23 | 25 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.34E-26 | 26 | 138 | No hit | No description |
PROSITE profile | PS51294 | 11.131 | 210 | 269 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-30 | 211 | 271 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.79E-19 | 211 | 270 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-25 | 213 | 266 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-6 | 215 | 265 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 654 aa Download sequence Send to blast |
MMMEARKGLM ERERERDQFP VGMRVLAVDD DPVCLKVLEV LLRRCQYHVT TTNQAATALR 60 LLRENKDMFD LVISDVHMPD MDGFKLLELV GLEMDLPVIM LSVNGETKSV LKGITHGACD 120 YLLKPVRIEE LRNVWQHVVR RKFSNREPNN NLDLCKEISK PPSADSYPRL GQATCDSHRS 180 CDQSNRAGKK RKEPHSEEED DGEDNDDAAG SKKPRVVWSV ELHRKFVAAV NQLGIDKAVP 240 KRILELMNVE KLTRENVASH LQKYRLYLRR LSAVASQQAS IAAAFGGRDP FLHMGAFEGL 300 HSYHQPFAPS AALPSFNPHG LLSSAGAAAF GLQDLASPKA NQCSSSNGIA SHCAGDTEKF 360 HIVSLQDNQQ ADLSQGLTAS SLGQPQLQQK WIHQETNDLC SVISGGALAN TMSGTLQRVT 420 SSSLPPEDLL ECTPHIKVGA HPSIGIPTGS SGLLERSVGV SANLRDSCIS QQCALPISEG 480 FSVNKLPLHI PFDGTGVTKL DASFVAGEQE MDQKGIFLER MSVSVCPSES LIVASNAKCR 540 ASSSGSIILP LPRDTERHSK YLQFGAASNS RHRMDGMRQD QRLNSGGFSY DGGAIVPEQT 600 DMYDLGVPKL QGGFNSSSCN FDGLLNSIIK VESDEVPFTE NDLGCELFPL GACI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 7e-24 | 210 | 272 | 2 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK369966 | 0.0 | AK369966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2102E11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020190045.1 | 0.0 | two-component response regulator ORR22-like | ||||
Swissprot | B8B3I4 | 0.0 | ORR22_ORYSI; Two-component response regulator ORR22 | ||||
TrEMBL | M8D838 | 0.0 | M8D838_AEGTA; Two-component response regulator | ||||
STRING | EMT32656 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1856 | 38 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-106 | response regulator 12 |