PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT32450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | NAC | ||||||||
Protein Properties | Length: 315aa MW: 34756.7 Da PI: 6.6745 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.9 | 3.4e-52 | 11 | 154 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...............kvka...eekewyfFskrdkkyatgkrknratksgyW 83 +ppGfrFhPt+eelv +yL++kv+++k++l ++i+evd+y++ePwdL++ + a +++ewyfFs +d+ky++g+r+nrat++g+W EMT32450 11 VPPGFRFHPTEEELVGYYLARKVAAQKIDL-DIIQEVDLYRIEPWDLQErcggggrggrgarqvA--AedeQSSEWYFFSFKDRKYPSGTRTNRATAAGFW 108 69****************************.99**************956899999999988542..3222445*************************** PP NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 katg+dk+v+s+ ++ ++g++ktLvfy+grap+g+ktdW++heyrl EMT32450 109 KATGRDKPVMSSrSRGVIGMRKTLVFYRGRAPNGRKTDWIIHEYRL 154 **********9856678***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-55 | 8 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.686 | 11 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-26 | 12 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MEQQHEEESC VPPGFRFHPT EEELVGYYLA RKVAAQKIDL DIIQEVDLYR IEPWDLQERC 60 GGGGRGGRGA RQVAAEDEQS SEWYFFSFKD RKYPSGTRTN RATAAGFWKA TGRDKPVMSS 120 RSRGVIGMRK TLVFYRGRAP NGRKTDWIIH EYRLQTSEHA PTQEEGWVVC RAFQKPAVNQ 180 RPSYIFPPPY AAAPGLGGYY DTRPRLHGQV GGDHHFLQSA AGAAGAGTLG FPGQGAQYCS 240 DELLESKQSL FGNIPQLIES PPTTAVAGCG DTGYGIGQHG EVAAGIDWNF LDSLLSTTQL 300 HEYSATAASQ LHLQQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-51 | 2 | 175 | 6 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184118.1 | 0.0 | NAC domain-containing protein 30-like | ||||
TrEMBL | M8C553 | 0.0 | M8C553_AEGTA; NAC domain-containing protein 7 | ||||
STRING | EMT32450 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2594 | 37 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71930.1 | 9e-88 | vascular related NAC-domain protein 7 |