PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT32411 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ERF | ||||||||
Protein Properties | Length: 392aa MW: 44169.1 Da PI: 9.5494 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.8 | 2.6e-18 | 133 | 182 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp + +r++lg+f++aeeAa+a++ +++++g EMT32411 133 QFRGIRQRP-WGKWAAEIRDPI----KgARVWLGTFDSAEEAARAYDVEARRIRG 182 69*******.**********72....46************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.16E-33 | 133 | 191 | No hit | No description |
SMART | SM00380 | 1.3E-36 | 133 | 196 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-22 | 133 | 191 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-32 | 133 | 191 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.868 | 133 | 190 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-11 | 134 | 182 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-11 | 134 | 145 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-11 | 156 | 172 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MLRGGRRAWG QAWLRHDDEA FKAEFEDFDA DSGYFDLDCG HGVTRRVVEA LLWPEKKKPR 60 QRGGRSRCFV GLDGLGVKLG FDMTTRPSRP NLRTSTPTQV VNLKHYFDDL STRASAGFDG 120 HTHMPAKRKR KNQFRGIRQR PWGKWAAEIR DPIKGARVWL GTFDSAEEAA RAYDVEARRI 180 RGKKARLNFP DEPTIPQKCH ALHVIPKVPK PSTTQEHSFI PAVNNLANRN DFVYPSAYST 240 SSQPLVQLDN MPFVPAMGSV TPVEVPAMNM YYDRRSNTFG CSMLGREYYT KTPNISSIAP 300 ISTIAEGEGS APIKSNTSNS VVLPVMENNG VNLEPWMRYL MDDSVDELIN SLLNFDVPRD 360 VVGNMDFVAS MTCPSMVNFS ERTKPYISGK RE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-20 | 132 | 190 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-20 | 133 | 190 | 5 | 63 | ATERF1 |
3gcc_A | 3e-20 | 133 | 190 | 5 | 63 | ATERF1 |
5wx9_A | 2e-19 | 132 | 195 | 13 | 77 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194339.1 | 1e-128 | ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q6K7E6 | 1e-100 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | M8D7G5 | 0.0 | M8D7G5_AEGTA; Ethylene-responsive transcription factor 1 | ||||
STRING | EMT32411 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.1 | 1e-32 | ERF family protein |