PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT32359
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 685aa    MW: 77330.5 Da    PI: 7.9366
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT32359genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.4e-07500539339
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkq 39 
                       W +eE ell +a +++++g   +W+ Ia+ +g+gR+  +
         EMT32359 500 EWGKEEVELLRKATQKYPKGtnkRWEVIAEFIGTGRSVDE 539
                      7**********************************99765 PP
2Myb_DNA-binding21.94e-07628671243
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      ++W++   + lv+a k ++++   +W+++a+ ++ g+t  qck +
         EMT32359 628 DAWSEAQVLALVQALKAFPKDanqRWERVAAAVP-GKTVVQCKKK 671
                      58********************************.********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1109.9E-21117222IPR001623DnaJ domain
SuperFamilySSF465658.24E-20118199IPR001623DnaJ domain
SMARTSM002711.7E-15120195IPR001623DnaJ domain
CDDcd062572.17E-13121192IPR001623DnaJ domain
PfamPF002266.8E-18121200IPR001623DnaJ domain
PROSITE profilePS5007618.151121203IPR001623DnaJ domain
PRINTSPR006251.3E-8126144IPR001623DnaJ domain
PRINTSPR006251.3E-8144159IPR001623DnaJ domain
PRINTSPR006251.3E-8175195IPR001623DnaJ domain
PROSITE patternPS006360180199IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.365493536IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.4E-5493540IPR009057Homeodomain-like
SMARTSM007175.7E-6497550IPR001005SANT/Myb domain
SuperFamilySSF466892.09E-7497541IPR009057Homeodomain-like
PfamPF002491.9E-5499540IPR001005SANT/Myb domain
SMARTSM007176.2E-6626678IPR001005SANT/Myb domain
SuperFamilySSF466891.05E-7627673IPR009057Homeodomain-like
CDDcd001674.95E-5629671No hitNo description
PfamPF002491.2E-5629671IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-4629671IPR009057Homeodomain-like
PROSITE profilePS500906.086630676IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MTWEWLSFSF AGVVSFELPT CGIALNEQFS RNLGAYAREL RPSSWENQEG EVELAPSKYE  60
PAGHSFHAVA LKLRGLDEKE DTETDDRSVS SDDKSQDFSA GSDNFSSKGK KKSGSGSQQQ  120
DHYALLGLGN LRFLATEDQI RKSYRDMALK HHPDKQAALL LHETTEAAKQ AKKDEIESHF  180
KAIQEAYEVL MDPTKRRIFD STDEFDDDIP TDCAPQDFFK VFGPAFMRNG RWSVTQPIPS  240
LGDDATPVVD VDQFYNFWYN FKSWREFPHE DEYDLEQAES REHKRWMERQ NAKIQEKAKK  300
VEYTRVRNLV DNAYRKDPRI QRRKEQEKAE KQRRKEAKYM AKKLQEEEAA RAAEEERKRK  360
EEEAKIAAAA ADIRKKLKEK EKKLLRKEKN RLRTLVGQVV GESHFSLSKE DVETVCTSHD  420
FEQLKKLCDI MEDKDTAEKA RLLRGALSKE ENSSNTSKEE KIHANGVADS TPKSTVPQGT  480
PKSTAPQVIT LGNNEKKEKE WGKEEVELLR KATQKYPKGT NKRWEVIAEF IGTGRSVDEI  540
LKATKTVLLQ KPDSSKAFNS FLEKRKAAPS IVSPLSTRDE TAGGSTVGAG TEPSKAAEQP  600
AASSSQTANE KTGADPVPEE APSATDPDAW SEAQVLALVQ ALKAFPKDAN QRWERVAAAV  660
PGKTVVQCKK KVASMRSNFR TKKAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A8e-1921732120124Zuotin
5dje_B8e-1921732120124Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1356377RKRKEEEAKIAAAAADIRKKLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178667.10.0dnaJ homolog subfamily C member 2
RefseqXP_020178668.10.0dnaJ homolog subfamily C member 2
RefseqXP_020178669.10.0dnaJ homolog subfamily C member 2
TrEMBLM8CDA00.0M8CDA0_AEGTA; DnaJ homolog subfamily C member 2
STRINGEMT323590.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81193440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06110.21e-175DnaJ domain ;Myb-like DNA-binding domain